Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0414 ATGGGGAGGGCTCCTTGCTGTGACAAAGCCAACGTGAAGAAAGGCCCATGGTCCCCAGAGGAAGACGCCAAGCTCAAGGCCTATATTGAGCAGCAAGGCACCGGCGGCAACTGGATTGCCTTGCCCCAAAAGATAGGCCTTAAGCGATGCGGGAAAAGCTGTCGCCTACGATGGTTGAATTATCTTCGCCCAAACATCAAGCATGGGGGTTTCTCGGAGGAAGAGGACAACATAATCTGCAGCCTCTATGTTACTATTGGAAGCAGGTGGTCAATAATAGCATCACAATTACCAGGGAGAACAGATAATGATATAAAGAACTACTGGAACACTCGGTTGAGGAAGAAGCTGCTGGGCAAACAGCGCAAGGAACAACAGGCCCAAGCTCCCCCAAAGCTTGTCATAAAGAACGAAACTGAAAATCGGGTGACACCTGTGACCCAAAATCCCACCTGGCCAGCCCACCTGTGCGCTCCAACATCTCAACCGTATGATCCCAACCATGGCGACTTGCCAAATAAAGTAGAGGGAACATTCTCTCAGAATCACCAGCAATCATACTCAGACTCACTTTCCCATACCATAAATTCCCACTACCCACTTCTCCACCAAGTAGAACGGAACCTATACCAAACCTCAATAAATTCAGCAACAGCACCGCCGGTGAATAATAGTAGCAGTAGCAGTTGTCAGTCGTCCAACATTTTCGAAGGCTTTGAAAACTTGGCTGTTGATTATTGGGATTGGAGTGAGTTGGTGAGTATGAGGCCTCAACAACAAAAACAACTAGATGATGAGACGTTGCAGGGTAATTACAATGGAATGGGAAACAGCGGTGCAGCTTCAACAGAAAGCACGAGCTGGGGTGATATCACCTCTCACCTGCAGGTTTACTCTCCTCGGCTGGTTTCTGGATACGAAGGTGTCCAACACGATGATATCGCTACCTACTTTGGAGGGGCAGAAGCCTGTGGAATGTTGGAAAGGTGGTTTGACGTTTTGGCCGTGACTTGCACGGCTTTAGCGATGGAGGCATCAGGGGAACCATTATGCATGGCTGATACTGCTATCACTGCTACTGCTGCAAAGTTATTCTCTTGGCCCAGTAACCAAAGTTAG 1119 0.4853 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEQQGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVTIGSRWSIIASQLPGRTDNDIKNYWNTRLRKKLLGKQRKEQQAQAPPKLVIKNETENRVTPVTQNPTWPAHLCAPTSQPYDPNHGDLPNKVEGTFSQNHQQSYSDSLSHTINSHYPLLHQVERNLYQTSINSATAPPVNNSSSSSCQSSNIFEGFENLAVDYWDWSELVSMRPQQQKQLDDETLQGNYNGMGNSGAASTESTSWGDITSHLQVYSPRLVSGYEGVQHDDIATYFGGAEACGMLERWFDVLAVTCTALAMEASGEPLCMADTAITATAAKLFSWPSNQS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0414 372 CDD SANT 71 113 IPR001005 -
Lele50g0414 372 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele50g0414 372 FunFam Transcription factor RAX3 7 68 - -
Lele50g0414 372 CDD SANT 16 62 IPR001005 -
Lele50g0414 372 SMART sant 67 115 IPR001005 -
Lele50g0414 372 SMART sant 13 64 IPR001005 -
Lele50g0414 372 Gene3D - 70 142 - -
Lele50g0414 372 FunFam Transcription factor MYB36 70 141 - -
Lele50g0414 372 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lele50g0414 372 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lele50g0414 372 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele50g0414 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele50g0414 372 Gene3D - 7 68 - -
Lele50g0414 372 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lele50g0414 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lele50g0414 372 PANTHER OS09G0431300 PROTEIN 1 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0414 Lele-ChrLele50 2335362 2337879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0414 1 126 MYB Transcription Factor Family AT3G49690 92.063 1.01e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele50g0414 Myb_DNA-binding 1.4e-13 CL0123