Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0411 ATGGATGGTGCAGTATTTGCCAGACATGTTGCCAATAAAGTTTTGAGCCCCAGGCCACCAAGGCAAATTGTGTTTGGTCACATGACTGGCTTGTTCGCCTTGCTCTCTTGGTCTCCGCTGTCCAGAGAGATGTCCAGAAATGAAGTGACTGGAGGGACAGATGGTATCGTGCCCGAGGTATTGGCGGCTCTTGTGTTGCCTATCCTAGAGACCAACTTGGCTAGAAAGAGAAAGATGAAGTCCGGGGAGAATGATGATGCCCATGACACACTAGTCACACAGCCTTCCTCCGCCACCGCAGATGCAGTTCCGGCGAGCTTTTATCCCTCATTGCCCCTTCCTCCTAATTATGGCATCTACTATGGTGGTCTTGAAGGTGAAAATGTCGGCTTCAATTCATCCTTTCCCGTTATGCCCCTAAAATCTGACGGCTCTCTCTATCTGATGCAGTCACAACCTCAAGGCAGCTCAACAATGGGAACCTTGAGCTTAGACAGCATGATTTTCACCAACCAATCCTCACGCCGAGAACTCAACAGCCCAAACTATGTAAACCGAGTCGAACAAGGGCAAGACATTCAGGCTCAGCCTTTCGCATCATACTATTCTGGCTTCAGAAGTCATGAAATGATGTTAGAAGTGCCCAAGCAGAATGAGGCTTCAGACTGTAATGTGCAGGTCCCTAGTATTGGAGAGGAGGGAGTTTCTGGAATGAATAGATGTGGCGTAAGAATGAACCCGGCGGGTCATGTCCCGGAGTCGGAGATGATGGTCAGCGTGGAGGATAACAATGGTGGGGAATCTGGATCCATGGGTTCAATGGCGTATGGCGATTTGCAGTCACTGAGCTTGTCCATGAGTCCTGGCTCACAATCAAGCTGCGTCACAAGTTCACAGAGAGCATCGCCTTCTGTCATTGATTCTGTTGGCGTGGATACAAAGAAAAGAGGGCCTGAAAAGTTTGACCAGAAGCAAATTATTCACCGGAAATCCATAGATACCTTTGGCCAAAGAACTTCCCAATATAGAGACATAGATGGACTGGTAGATATGAAGCTCATCTTTGGGACAACAGTTGCAAGAAAGAGGGTCAAAGCAGGAAAGGAAGGCAAGCGTATCAGATTATGTGGACATATTTGCTTGTTTTTTGTTTACGATGCTAGCAAAAAAATGATAATTAATGTTTATGCAAGTGGATCCAAATATTTGATCACAGGGGGTTATGATGTGGAAGAAAAAGCTGCGAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCATATCAATTTCCCGTTGGAGAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACCAGACAGGAATACGTAGCTCATTTGCGGAGGAAAAGCAGCGGATTCTCCAGAGGTGCTTCCATGTACAGAGGAGTAACAAGACATCATCAACATGGGCGGTGGCAAGCTCGAATCGGTAGAGTTGCTGGAAACAAGGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAGGCATATGACATTGCAGCTATAAAGTTCCGTGGAGTAAATGCGGTGACCAACTTTGATATAACAAGATATGATGTGGACAAAATCATGGCCAGCAGTAACCTTCTTAGCGGTGAACTAGCCAGGCGGAACAGAAGGATCGATGGTGGTAACGATCAGGCTATTATTCCTATAGGTACAGCATATGTTGGAAACCAGGACGCGATTTCAATGCGCAAGAGCTTGGAGGGCCAATCATCAGAGTGGACGCTGGGAACGCATATCTTAAATCGTTCTCAATGGATGACAGAACTTGACCAAAATCCACCAAGAATTGAGACTTATAGAACTCATCAGTCCTTCTCAATGCCTTTAGATAACATGATCCATCAAGTAAATGACTCAGCAAAGATGGGAACGCACGTCTCAAATCCTTCGTCATTAGTAACAAGCTTGGCCAGCTCACGTGAAGTTAGCCCTGATAAAACTAGCTTGCCAATTCTCACTGAATCGCCTTCGTTAGCGACCAGCTTAAGGCCTCCACTTTCATTGCCTCATGTGCCAGTTTTTGCTGCATGGACAGATGCTTGA 2097 0.4621 MDGAVFARHVANKVLSPRPPRQIVFGHMTGLFALLSWSPLSREMSRNEVTGGTDGIVPEVLAALVLPILETNLARKRKMKSGENDDAHDTLVTQPSSATADAVPASFYPSLPLPPNYGIYYGGLEGENVGFNSSFPVMPLKSDGSLYLMQSQPQGSSTMGTLSLDSMIFTNQSSRRELNSPNYVNRVEQGQDIQAQPFASYYSGFRSHEMMLEVPKQNEASDCNVQVPSIGEEGVSGMNRCGVRMNPAGHVPESEMMVSVEDNNGGESGSMGSMAYGDLQSLSLSMSPGSQSSCVTSSQRASPSVIDSVGVDTKKRGPEKFDQKQIIHRKSIDTFGQRTSQYRDIDGLVDMKLIFGTTVARKRVKAGKEGKRIRLCGHICLFFVYDASKKMIINVYASGSKYLITGGYDVEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVDKIMASSNLLSGELARRNRRIDGGNDQAIIPIGTAYVGNQDAISMRKSLEGQSSEWTLGTHILNRSQWMTELDQNPPRIETYRTHQSFSMPLDNMIHQVNDSAKMGTHVSNPSSLVTSLASSREVSPDKTSLPILTESPSLATSLRPPLSLPHVPVFAAWTDA 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0411 698 CDD AP2 470 531 IPR001471 GO:0003700|GO:0006355
Lele50g0411 698 Coils Coil 436 456 - -
Lele50g0411 698 ProSiteProfiles AP2/ERF domain profile. 471 529 IPR001471 GO:0003700|GO:0006355
Lele50g0411 698 Pfam AP2 domain 472 521 IPR001471 GO:0003700|GO:0006355
Lele50g0411 698 SMART rav1_2 361 441 IPR001471 GO:0003700|GO:0006355
Lele50g0411 698 SMART rav1_2 471 535 IPR001471 GO:0003700|GO:0006355
Lele50g0411 698 SUPERFAMILY DNA-binding domain 398 437 IPR016177 GO:0003677
Lele50g0411 698 FunFam AP2-like ethylene-responsive transcription factor 470 531 - -
Lele50g0411 698 Gene3D AP2/ERF domain 362 437 IPR036955 GO:0003700|GO:0006355
Lele50g0411 698 Gene3D AP2/ERF domain 471 531 IPR036955 GO:0003700|GO:0006355
Lele50g0411 698 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 263 555 - -
Lele50g0411 698 ProSiteProfiles AP2/ERF domain profile. 341 435 IPR001471 GO:0003700|GO:0006355
Lele50g0411 698 SUPERFAMILY DNA-binding domain 470 530 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0411 Lele-ChrLele50 2298150 2304769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0411 269 698 AP2-EREBP Transcription Factor Family AT4G37750 47.930 5.20e-113 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele50g0411 AP2 1.2e-09 CL0081