Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0401 ATGCCGATGTACCAGCCTTCTAAACGGGATATGGTTGCTGGCTTCGACGGTGGGGGTGACGGGCAGATTCTAGATCTGGATACCGCCGTCAAGGATGGGGTTTTAGGCGGCGTTGACGGTGGGATTGTCGGAGCTGGTGCCGGCGAGAAATTGGATCTGGGAAAGATGATTCAAGAGCTCGACTTGTCCGAAGTTCCTACGGTCTTTATCTGCCCAATATCCCTTGAGCCAATGCAAGATCCAGTCACCCTCTGCACCGGCCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAATTTGGGGCACCTAACCTGTCCTACCACAATGCAAGAGCTCTGGGACGATTCTATTACTCCGAATACAACCCTTTACCGTCTTATATTCACTTGGTTTTCTCAGAAGTATCTGCTGATGAAGAAGAGATCGGAAGATGTGCAGGGGAGGGCGTCAGAACTCGTGGAGACGCTGAAGAAAGTGAAGGGTCAAGCTCGAGTTCAAGCCCTCAAGGAGCTCCATGACGTGGTTGCTGCTCACTCCACTGCCCGCAAGACAGTCATTGATGAAGGTGGAGTCTCTGTAATGTCTTCCTTACTCGGTCCTTTTACTTCCCATGCTGTTGGCTGCGAGGTCATAGGTATACTTGTATGTTTGACCCTTGATTCTGAATCGAAAAAGAATTTAATGCAACCTGCAAAGCTTTCTCTAATGGTGGACATTTTGAACGAGGGTTCAATTGAGACAAAAATCAATTGCACCCGACTGATTGAATCATTGATTGAGGAGAATGATTTTCGTTCTGAGATTATTTCGAGCCATAGCCTCTTGGTTGGGCTGATGCGGCTTGTGAAGGATAAGAGACACTCAAACGGAATATTTCCTGGGCTTAGCCTCCTTGGAAAATTATGCTTACATAAAGAAGTTAAGAATTTGCTAGTGAGTATTGGGGCTGTTGCTCAGCTGGTTGAATTGTTATCTGGTCTGGAGCCAGAGTGTTCCGAGTTGGCGCTTTCCATTTTAGATGCATTGGCATCGATACCTGAAGGCAGAGTAGCGTTGAAGAACTGTTCCACAACTATACCCAATATGGTGAGTCACTTAATGAGAATCTCAGAGAACTGCACCCAATATGCATTGTCAATCCTATGGTCTGTGTGCAAGCTCGCTCCTGAGGAGTGCTCGTCCGTTGCTTTGGATGCGGGACTCGCCGCAAAGCTACTCCTTGTCATCCAAAGTGGTTGCAATCCTATATTGAAGCAAGAGTCTGCTGAGCTTCTGAAGCTGTGTAGTTTGAATTATTCTGATACTATCTTCATTTCCAAATGCAAGCTTACTAGAACCATCCAATGA 1350 0.4674 MPMYQPSKRDMVAGFDGGGDGQILDLDTAVKDGVLGGVDGGIVGAGAGEKLDLGKMIQELDLSEVPTVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHLTCPTTMQELWDDSITPNTTLYRLIFTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVQALKELHDVVAAHSTARKTVIDEGGVSVMSSLLGPFTSHAVGCEVIGILVCLTLDSESKKNLMQPAKLSLMVDILNEGSIETKINCTRLIESLIEENDFRSEIISSHSLLVGLMRLVKDKRHSNGIFPGLSLLGKLCLHKEVKNLLVSIGAVAQLVELLSGLEPECSELALSILDALASIPEGRVALKNCSTTIPNMVSHLMRISENCTQYALSILWSVCKLAPEECSSVALDAGLAAKLLLVIQSGCNPILKQESAELLKLCSLNYSDTIFISKCKLTRTIQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0401 449 CDD RING-Ubox_PUB 69 111 IPR045210 -
Lele50g0401 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Lele50g0401 449 PANTHER WDSAM1 PROTEIN 61 435 IPR045185 GO:0061630
Lele50g0401 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Lele50g0401 449 Gene3D - 138 443 IPR011989 -
Lele50g0401 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Lele50g0401 449 SUPERFAMILY RING/U-box 60 135 - -
Lele50g0401 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Lele50g0401 449 SUPERFAMILY ARM repeat 235 435 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0401 Lele-ChrLele50 2239463 2240812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0401 1 449 U-box Gene Family AT3G49810 73.719 0.0 662