LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g0397	ATGGCTAGCTGTAGTTCAAGCTCAAAGCCACCGGTGTGGCTGAGAAGCCAAAGAGAAAGCTGGCTTTCCGGCGGCCTTAGATTTCAGGCCTTCAATGTTGGGGCCAGAGCAAAATCTTGTGGTTGTATGTGGAGGTCGGAGAGCAGAGAGAGAGCAGCGGCAGAATTTGTAGTGAGAGGAAGCGGCGAGTGGGACCAAATCAGAGGAGACGGCTACGGCACCGCCGACGAAGACCATGTGTTTGTCAACGTCCTGCGAGAGGCTCAGCCCTATATCTCTATTCACAGAGACAGCGTCTTCGTCCTCGTCATTTCCGCTGAAATTATTGCCAGCCCTCACCTGGACGCCATTCTCAAGTCGTTCCGACTTCCGATTCAGTTAATGGCCGGAATGTTTTTACTTGGAGGAGATTTCGCCACCGTCCTAGGGTTTTGTTTTTGTTGGAAGCGGTGCGATGTGTCATTGTCGCAGTCAGGGGATTTGGCGGGGGGAACTGGTGGACAAATCAGTAAACCTCAGGAATGGCCTAGTTGGACGAGGCTGTTCAATCGCGGGTCTGCCGTGAGCGTAAATGCTAAATTAATCGGGAACCTGCAAATAAAAACATTTAATCTAGCCCTGCCTCGTGACATTTCGTTTACCCTTGATATCTTCTCAATGGCGGCTTCAATATCGAGCTCTGCCATTTCTCTTCACACTCCTCCCAAATTTTCAGATTTCCTCTTACGTGCGGACCTGTGCTATTCTTCTCACAATTTCTACTCGCAACTGAATGTAAAATTTCGTTCCCTAAAACCCTTAGCTGTAGCCGCCGATGCCAGAGTAAAGCTCAATAAGGGAACCTCAACGAAATGCAATGTGTTCAGCGAAGAATTGGGAGAGAGCGCCGAAGATGAGAGCTATGGTACAGAGAAAGACAAGCAATTTGTGCTCTGGTTTCGCGAGGCCTGGCCTTACTTACGGGCCCATAGGGGCGGCACCTTCGTCGTCATTATTTCCGGTGAAATTGTGGCTAGTCCTTTCTTAGATCTCATTCTTAAGGATATAGCTTTACTTCATCAGCTCGGAATTCGGTTTGTTCTTGTACCGGGGACCCATGTGCAAATAGACAAGCTTTTGGCTGACAGAGGGAGCAAAGCTAAGTATGATGGTCGGTATAGGGTTACTGATGATGAATCTCTTTCTGCTGCCATGGAAGCAGCTGGCGGAATCAGGTTGATGATAGAAGCCAAACTTTCTCCTGGACCGTCCAAATGCAATATTCGTCGACATGGTGATAATAGTCGCTGGCATGAAGTTGGTGTCAGTGTTGCTAGTGGTAACTTTCTCGCAGCTAAGAGAAGAGGGGTTGTTAATGGAATTGACTATGGGTCAACTGGAGAAGTTAAGAAAGTAGACGTTTCTCGCATGCGGGAGAGGCTTGATGGTGGATGTATAGTTCTTCTAAGTAACCTTGGCTATTCCAGCTCCGGAGAAGTATTAAATTGCAACACCTATGAAGTTGCAACGGCTTGTGCATTAGCTATTGGAGCAGACAAGCTTATTTGCATCATAGATGGTCCAATACTTGATGAGAATGCACGCCTTATTCATTACTTGCCTCTTCAAGAAGCAGATTTGTTAATCCGTAAACGGGCTGAGCAAAGTGAAATAGCTGCTAACTATGTCAAAGCTGTTGATGATGATAATTTCAGCTCTCTTGGTTGTAAAAGTTCTAATGGAACAGCCCATTCCCCGCAGAATGGATATTCTTATGCCAGAACCCATAATGCAACCTTTCTTAATGGTGTTGGTTTCGACAATGGGAATGGCCTATGGTCTGGTGAACAAGGCTTCGCTATTGGAGGTCAAGAGCGGCTAAGTCGAATGAATGGTTACCTGTCAGAATTGGCTGCAGCAGCTTTTGTCTGCAGAGGAGGTGTGCAAAGAGTTCACTTACTGGATGGAACTATTAGTGGAGTTTTGTTGTTTGAATTGTTTAAGAGAGATGGGATGGGAACAATGGTGGCCAGTGATCTGTATGAAGGCACTCGGATGGCTCAGGTTGCAGATGTTCCTGCAATAAAACAACTTATTCAGCCTTTGGAGGCATCTGGTGTATTGATTAAGAGGACTGATGAGGAGTTGCATCAATCAGTGGATTCATTCGATGTTGTGGAAAGGGAGGGTCAAATAATTGGTTGCGCTGCACTTTTTCCTTTCTTTGAGGAGAAGTGTGGAGAGGTTGCTGCCATTGTAGTATCGCCAGACTGTCGAGGCCAAGGACAGGGTGACAAATTGCTTGACTATCTTGAGAAGAAGGCTTCGTCTCTTGGGTTGAACATGCTTTTCCTGCTTACGACTCGGACAGCGGATTGGTTTGTGAGTCGCGGATTTTCAGAATGTTCAATTGATTATATACCGGAGAAGAGAAGGGGCAGAATTGATCTGTCCCGTAATTCCAAGTATTATATGAAGAGGCTTCAACTCGACAGAAGTGGAATTATAGTTGGTAGAAAATTTGTACAGGATTAG	2514	0.4622	MASCSSSSKPPVWLRSQRESWLSGGLRFQAFNVGARAKSCGCMWRSESRERAAAEFVVRGSGEWDQIRGDGYGTADEDHVFVNVLREAQPYISIHRDSVFVLVISAEIIASPHLDAILKSFRLPIQLMAGMFLLGGDFATVLGFCFCWKRCDVSLSQSGDLAGGTGGQISKPQEWPSWTRLFNRGSAVSVNAKLIGNLQIKTFNLALPRDISFTLDIFSMAASISSSAISLHTPPKFSDFLLRADLCYSSHNFYSQLNVKFRSLKPLAVAADARVKLNKGTSTKCNVFSEELGESAEDESYGTEKDKQFVLWFREAWPYLRAHRGGTFVVIISGEIVASPFLDLILKDIALLHQLGIRFVLVPGTHVQIDKLLADRGSKAKYDGRYRVTDDESLSAAMEAAGGIRLMIEAKLSPGPSKCNIRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGIDYGSTGEVKKVDVSRMRERLDGGCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIIDGPILDENARLIHYLPLQEADLLIRKRAEQSEIAANYVKAVDDDNFSSLGCKSSNGTAHSPQNGYSYARTHNATFLNGVGFDNGNGLWSGEQGFAIGGQERLSRMNGYLSELAAAAFVCRGGVQRVHLLDGTISGVLLFELFKRDGMGTMVASDLYEGTRMAQVADVPAIKQLIQPLEASGVLIKRTDEELHQSVDSFDVVEREGQIIGCAALFPFFEEKCGEVAAIVVSPDCRGQGQGDKLLDYLEKKASSLGLNMLFLLTTRTADWFVSRGFSECSIDYIPEKRRGRIDLSRNSKYYMKRLQLDRSGIIVGRKFVQD	837

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g0397	837	SUPERFAMILY	Carbamate kinase-like	623	671	IPR036393	-
	Lele50g0397	837	CDD	AAK_NAGS-ABP	308	669	IPR033719	-
	Lele50g0397	837	CDD	NAT_SF	718	778	-	-
	Lele50g0397	837	Hamap	Amino-acid acetyltransferase [argA].	308	821	IPR010167	GO:0004042\|GO:0005737\|GO:0006526
	Lele50g0397	837	Gene3D	-	675	821	-	-
	Lele50g0397	837	Pfam	Amino acid kinase family	328	540	IPR001048	-
	Lele50g0397	837	TIGRFAM	N-Ac-Glu-synth: amino-acid N-acetyltransferase	630	821	IPR010167	GO:0004042\|GO:0005737\|GO:0006526
	Lele50g0397	837	PANTHER	AMINO-ACID ACETYLTRANSFERASE	290	828	IPR010167	GO:0004042\|GO:0005737\|GO:0006526
	Lele50g0397	837	Gene3D	-	307	674	IPR036393	-
	Lele50g0397	837	SUPERFAMILY	Acyl-CoA N-acyltransferases (Nat)	678	821	IPR016181	-
	Lele50g0397	837	Pfam	Acetyltransferase (GNAT) family	715	779	IPR000182	GO:0016747
	Lele50g0397	837	ProSiteProfiles	Gcn5-related N-acetyltransferase (GNAT) domain profile.	675	823	IPR000182	GO:0016747
	Lele50g0397	837	SUPERFAMILY	Carbamate kinase-like	308	543	IPR036393	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g0397	Lele-ChrLele50	2216650	2223229	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	GNAT	Lele50g0397		AA_kinase	4.9e-11	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele50g0397	50	2216650	2223229	Lele51g0378	51	2170562	2181619	hybridization
	Lele50g0397	50	2216650	2223229	Lele52g0393	52	2303531	2310069	hybridization