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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Lele50g0394
ATGGGGGCTCCAAAGCAAAAATGGACTGCTGAAGAAGAAGCGGCACTGAAAGCTGGAGTAATGAAACATGGGGCAGGAAAGTGGCGCACTATACTTACAGACCCAGAGTTCAGTGCTATTTTGCTCATGCGTTCAAATGTAGATCTAAAGGATAAATGGAGGAATATAAATGTGACTGCAATATGGGGATCCAGACAGAAGGCAAAACTTGCGCTTAAAAGGAACCTACCAGCCCCCAAAAATGATAACAACCTGATGGCCTTGAGTACTGCTGTTCAACATGGTGAAGAAGTTCTTGATACTAAGCCTCTAGCAATTGCTGGCGGAATGTCACAGTCTGCGAATCCAAAAGAACAAATATCTAGGTTGGATAATCTTATATTAGAGGCTATTGTCAATTTGAAGGAGCCAAAGGGTACTGACAGGGCTGCTATTGCTGCTTACATAGAGGAGCATTACTGTTCTCCACCGAACCTCAGAAAGTTATTGTCAACAAAACTGAAGCATATGGTGGCTAGTGGCAAATTGATTAAGGTAAAACACAAGTACAGGATCACTCCAAGTTCTGCAATCACTGAAAAAAAAAGACACTCTAACTTGTTACTCCTGGAAGGGAGGCCCAAAGATTCTCCAAAAGCGGAGAAGACCAATGTCAACATCCTTTCAAAATCCCAAATTGACTCAGAGCTATCAAAAATGAAGGGCGTGACAGCCCAAGAAGCTGCTACAGCTGCTGCAAAGGCAGTTGCGGAAGCAGAAGCTGCAATTGCTGAGGCAGAGGCAGCAGCTAGGGAGGCGGAAGCTGCAGAAGCTGAAGCTCAGGCCGCACAAGTGTTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAGAACACTGCAAATTTGATGGTGCGAACTCAAGGCAGCATCGTCACCAGCTTTCCTCTAG
927
0.4488
MGAPKQKWTAEEEAALKAGVMKHGAGKWRTILTDPEFSAILLMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKNDNNLMALSTAVQHGEEVLDTKPLAIAGGMSQSANPKEQISRLDNLILEAIVNLKEPKGTDRAAIAAYIEEHYCSPPNLRKLLSTKLKHMVASGKLIKVKHKYRITPSSAITEKKRHSNLLLLEGRPKDSPKAEKTNVNILSKSQIDSELSKMKGVTAQEAATAAAKAVAEAEAAIAEAEAAAREAEAAEAEAQAAQVFAKAAMKALKCRTLQIXWCELKAASSPAFL
308
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Lele50g0394
308
Coils
Coil
242
276
-
-
Lele50g0394
308
CDD
SANT_TRF
6
57
-
-
Lele50g0394
308
FunFam
Telomere repeat-binding factor 1
2
58
-
-
Lele50g0394
308
Pfam
linker histone H1 and H5 family
124
181
IPR005818
GO:0000786|GO:0003677|GO:0006334
Lele50g0394
308
SUPERFAMILY
Homeodomain-like
2
67
IPR009057
-
Lele50g0394
308
Gene3D
-
2
59
-
-
Lele50g0394
308
PANTHER
SINGLE MYB HISTONE 4
1
290
IPR044597
GO:0003691
Lele50g0394
308
ProSiteProfiles
Myb-type HTH DNA-binding domain profile.
1
61
IPR017930
-
Lele50g0394
308
ProSiteProfiles
Myb-like domain profile.
5
57
IPR001005
-
Lele50g0394
308
Pfam
Myb-like DNA-binding domain
5
56
IPR001005
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Lele50g0394
Lele-ChrLele50
2207710
2210820
Dispersed/Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Lele50g0394
1
296
Single Myb Histone (SMH) Gene Family
AT5G67580
56.187
4.15e-84
253
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
MYB-related
Lele50g0394
Linker_histone
5.3e-12
CL0123
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Lele53g0208
53
1715498
1716013
Lele50g0394
50
2207710
2210820
CCT
Lele54g0212
54
1793755
1795717
Lele50g0394
50
2207710
2210820
CCT
Lele55g1279
55
19282303
19284784
Lele50g0394
50
2207710
2210820
CCT
Lele56g1226
56
15644506
15646465
Lele50g0394
50
2207710
2210820
CCT
Lele50g0394
50
2207710
2210820
Lele51g0376
51
2162644
2165519
hybridization
Lele50g0394
50
2207710
2210820
Lele52g0391
52
2294682
2297782
hybridization
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