Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0394 ATGGGGGCTCCAAAGCAAAAATGGACTGCTGAAGAAGAAGCGGCACTGAAAGCTGGAGTAATGAAACATGGGGCAGGAAAGTGGCGCACTATACTTACAGACCCAGAGTTCAGTGCTATTTTGCTCATGCGTTCAAATGTAGATCTAAAGGATAAATGGAGGAATATAAATGTGACTGCAATATGGGGATCCAGACAGAAGGCAAAACTTGCGCTTAAAAGGAACCTACCAGCCCCCAAAAATGATAACAACCTGATGGCCTTGAGTACTGCTGTTCAACATGGTGAAGAAGTTCTTGATACTAAGCCTCTAGCAATTGCTGGCGGAATGTCACAGTCTGCGAATCCAAAAGAACAAATATCTAGGTTGGATAATCTTATATTAGAGGCTATTGTCAATTTGAAGGAGCCAAAGGGTACTGACAGGGCTGCTATTGCTGCTTACATAGAGGAGCATTACTGTTCTCCACCGAACCTCAGAAAGTTATTGTCAACAAAACTGAAGCATATGGTGGCTAGTGGCAAATTGATTAAGGTAAAACACAAGTACAGGATCACTCCAAGTTCTGCAATCACTGAAAAAAAAAGACACTCTAACTTGTTACTCCTGGAAGGGAGGCCCAAAGATTCTCCAAAAGCGGAGAAGACCAATGTCAACATCCTTTCAAAATCCCAAATTGACTCAGAGCTATCAAAAATGAAGGGCGTGACAGCCCAAGAAGCTGCTACAGCTGCTGCAAAGGCAGTTGCGGAAGCAGAAGCTGCAATTGCTGAGGCAGAGGCAGCAGCTAGGGAGGCGGAAGCTGCAGAAGCTGAAGCTCAGGCCGCACAAGTGTTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAGAACACTGCAAATTTGATGGTGCGAACTCAAGGCAGCATCGTCACCAGCTTTCCTCTAG 927 0.4488 MGAPKQKWTAEEEAALKAGVMKHGAGKWRTILTDPEFSAILLMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKNDNNLMALSTAVQHGEEVLDTKPLAIAGGMSQSANPKEQISRLDNLILEAIVNLKEPKGTDRAAIAAYIEEHYCSPPNLRKLLSTKLKHMVASGKLIKVKHKYRITPSSAITEKKRHSNLLLLEGRPKDSPKAEKTNVNILSKSQIDSELSKMKGVTAQEAATAAAKAVAEAEAAIAEAEAAAREAEAAEAEAQAAQVFAKAAMKALKCRTLQIXWCELKAASSPAFL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0394 308 Coils Coil 242 276 - -
Lele50g0394 308 CDD SANT_TRF 6 57 - -
Lele50g0394 308 FunFam Telomere repeat-binding factor 1 2 58 - -
Lele50g0394 308 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele50g0394 308 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Lele50g0394 308 Gene3D - 2 59 - -
Lele50g0394 308 PANTHER SINGLE MYB HISTONE 4 1 290 IPR044597 GO:0003691
Lele50g0394 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lele50g0394 308 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lele50g0394 308 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lele50g0394 308 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele50g0394 308 CDD H15 125 196 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele50g0394 308 Gene3D - 116 198 IPR036388 -
Lele50g0394 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele50g0394 308 SMART sant 4 59 IPR001005 -
Lele50g0394 308 SUPERFAMILY "Winged helix" DNA-binding domain 118 196 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0394 Lele-ChrLele50 2207710 2210820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0394 1 296 Single Myb Histone (SMH) Gene Family AT5G67580 56.187 4.15e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele50g0394 Linker_histone 5.3e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0208 53 1715498 1716013 Lele50g0394 50 2207710 2210820 CCT
Lele54g0212 54 1793755 1795717 Lele50g0394 50 2207710 2210820 CCT
Lele55g1279 55 19282303 19284784 Lele50g0394 50 2207710 2210820 CCT
Lele56g1226 56 15644506 15646465 Lele50g0394 50 2207710 2210820 CCT
Lele50g0394 50 2207710 2210820 Lele51g0376 51 2162644 2165519 hybridization
Lele50g0394 50 2207710 2210820 Lele52g0391 52 2294682 2297782 hybridization