Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0378 ATGGCTTGTACCAAGAAATTTATTCCTCTTCCACCTCCTTATCCCCGTCCAGCAGTAACCAGTTGTCCTTGCAAGGATGCAGTTATGAAAAATTCACCACCAAGAGGCCGTAGTTGTGTTTCTGTAGCAACAAGAGATTTATGGGAGCGTCTTTTTGATGAAGGTTATAAAGCAGATGTTTTCATTAATACTGATAATGGAGGCATTGTTTTCGCGCATTCTTATATTCTTGCCATGGCTTCTCCAGTAATGAGAGGCATGCTTAAGCGAGCTAAACGCCATCATCATATGAAATCAATCTTGATTTCTGGGGTTCCACATGGCGCTGTTCGAGCTTTCATTCGATTTTTGTATAGTTCCTGTTACGAGAAAGAAGAAATGAATGAATTCGTGTTACATTTGTTGGTGCTGTCACATGTATTTGTGGTTCCCCACTTGAAGCGTGAATGCGAACAGGAGCTAGAATCGGATTTCCTCACCATCGACAATATAGTTGATGTATTTCAACTTGCATTACTATGTGATGCTCCCCGCCTTACCCTCATTTGTCACCGTCGCATCCTAAAAAATTTTAAAACAGTTTCGGTGTCCGAAGGGTGGAAGGCTATGAAAGAGAGCCATCCAACTCTAGAGAAGGAACTTCTGGAGTCTCTTATCGAGGAAGAAAATAGCACAAAGGAGAGGATCAGACAGATGAATGAGAAGAAAATTTATCTTCAATTATACGAGGCAATGGAAGCTCTGGTTCACATATATAAGGATGGGTGTCGAACCATAGGCCCACACGATAAAGACTTCAAAGAAAACCAAGCACCATGTAGTTTTGCAGCTTGTAAAAGCTTAGAATTGCTTGTCCGCCATTTTGCTGGGTGCAAGTTGAGAGTACCTGGTGGTTGCAATCATTGCAAGAGGATGTGGCAGCTTTTGGAGTTGCACTCTCGAATATGTGCCGATCCAGATAACTGTAGAGTTCCTTTATGCAGGAACTTTAAGGAGAGAATATCGAAACAAAGCAAGAAAGATGAAGTTAGGTGGAGAATACTGGTAGAAAAGATCTTGAGAACTAGGGGCATTGCGGTAGCACCATTCTTTCAAAAGCAATGA 1104 0.4176 MACTKKFIPLPPPYPRPAVTSCPCKDAVMKNSPPRGRSCVSVATRDLWERLFDEGYKADVFINTDNGGIVFAHSYILAMASPVMRGMLKRAKRHHHMKSILISGVPHGAVRAFIRFLYSSCYEKEEMNEFVLHLLVLSHVFVVPHLKRECEQELESDFLTIDNIVDVFQLALLCDAPRLTLICHRRILKNFKTVSVSEGWKAMKESHPTLEKELLESLIEEENSTKERIRQMNEKKIYLQLYEAMEALVHIYKDGCRTIGPHDKDFKENQAPCSFAACKSLELLVRHFAGCKLRVPGGCNHCKRMWQLLELHSRICADPDNCRVPLCRNFKERISKQSKKDEVRWRILVEKILRTRGIAVAPFFQKQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0378 367 Coils Coil 212 235 - -
Lele50g0378 367 SUPERFAMILY POZ domain 44 155 IPR011333 -
Lele50g0378 367 FunFam BTB/POZ and TAZ domain-containing protein 2 160 230 - -
Lele50g0378 367 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 31 361 IPR044513 -
Lele50g0378 367 SUPERFAMILY TAZ domain 235 336 IPR035898 -
Lele50g0378 367 CDD BACK 160 203 - -
Lele50g0378 367 Pfam TAZ zinc finger 242 327 IPR000197 -
Lele50g0378 367 ProSiteProfiles BTB domain profile. 58 126 IPR000210 GO:0005515
Lele50g0378 367 Pfam BTB/POZ domain 50 155 IPR000210 GO:0005515
Lele50g0378 367 ProSiteProfiles Zinc finger TAZ-type profile. 232 330 IPR000197 -
Lele50g0378 367 SMART BTB_4 58 158 IPR000210 GO:0005515
Lele50g0378 367 FunFam BTB/POZ and TAZ domain-containing protein 2 232 357 - -
Lele50g0378 367 Gene3D - 159 233 - -
Lele50g0378 367 Gene3D TAZ domain 234 355 IPR035898 -
Lele50g0378 367 Gene3D Potassium Channel Kv1.1; Chain A 40 158 IPR011333 -
Lele50g0378 367 SMART TAZ_2 235 328 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0378 Lele-ChrLele50 2152518 2154647 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Lele50g0378 BTB 1.3e-13 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0378 50 2152518 2154647 Lele50g0378 50 2152518 2154647 ECH
Lele50g0378 50 2152518 2154647 Lele52g0381 52 2241839 2243979 hybridization