Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0372 ATGGTAGAACAGTCTGGGACGGTGGTGGTGGTGAGAGAATTCGATGCCAATAAGGACCGAGAGAGAGTGGAAGCCATGGAAAAGATATGTGAGGTCGGACCCAGTGGGAAGCTCTCCCTGTTCACCGACCTCATGGGTGACCCGATTTGCAGGGTCCGCAACTCACCTGCTTTTCTCATGCTGGTAGCCGAGATGGGCCAAGAGATCGTGGGAATGATAAGGGGCTGCATCAAAACCGTTACATGTGGAAAGAAGCTATCCAGAAATGTGAAGAACCCGTACTTGAGTATCAACGACCCTGAGAACTTCCAAGCAACTCCCGGATACGTCCCTGTATACACTAAACTAGCCTACATTTTAGGCCTCCGCGTCTCGCCTTCTCACCGGAGAATGGGAATAGGGTTGAAGTTGGTGCACAGAATGGAGGAGTGGTTCAGCGACAATGGGGTTGAGTACTCGTATATAGCGACGGAAAACGACAATTTAGCATCCGTTAAGCTCTTCACCGACAAATGCGGATACTCCAAGTTCCGTACCCCGTCAATCCTTGTCAATCCCGTTTACGCTCACAGAGTGAAGGTCTCTCGCAAGGTCACCATCATCCCGCTCGACTCCGACGACGCCGAATCCCTCTATCGTCGTCGCTTCACCACCACCGAATTCTTCCCTCGCGACATTGATTCCATCCTGAAAAACAAACTCAGCCTCGGGACCTTCCTCGCCATCCCAAGTGGGTCCTACAGTGCAGAGACATGGCCCGGGTTGGATCGCTTCCTGTCGGACCCACCAAAGTCCTGGGCAGTGCTCAGCGTCTGGAACTGCAAGGAAGTATTCACGCTCGAAGTGCGGGGCGCGTCGCTCGTGAAGCGGACCCTGGCGAAGACGACCAGAATAGTGGATCGGGCCATGCCGTGGCTGAGACTGCCGTCGATCCCGAACTTCTTCAGACCGTTCGGACTGCACTTCCTGTACGGACTAGGGGGCGAAGGCCCGGGAGTGGTTGAGATGGTGAAGGCCTTGTGCGGGTTCGCACATAACCTGGCCAAGGAAGGTGGCTGTGGGTTGGTGGCGACGGAGGTGTCGAGCCGCGATCCCCTCAAGTTTGGGATACCACACTGGAAGATGTTGTCTTGCGACGAGGATTTATGGTGCATCAAGCGGCTCGGGGAAGACTACAGTGACGGCTCTGTGGGTGACTGGACCAAATCTCCGCCCGGAGGGTCCATTTTTGTTGACCCCAGAGAAGTTTAA 1251 0.5484 MVEQSGTVVVVREFDANKDRERVEAMEKICEVGPSGKLSLFTDLMGDPICRVRNSPAFLMLVAEMGQEIVGMIRGCIKTVTCGKKLSRNVKNPYLSINDPENFQATPGYVPVYTKLAYILGLRVSPSHRRMGIGLKLVHRMEEWFSDNGVEYSYIATENDNLASVKLFTDKCGYSKFRTPSILVNPVYAHRVKVSRKVTIIPLDSDDAESLYRRRFTTTEFFPRDIDSILKNKLSLGTFLAIPSGSYSAETWPGLDRFLSDPPKSWAVLSVWNCKEVFTLEVRGASLVKRTLAKTTRIVDRAMPWLRLPSIPNFFRPFGLHFLYGLGGEGPGVVEMVKALCGFAHNLAKEGGCGLVATEVSSRDPLKFGIPHWKMLSCDEDLWCIKRLGEDYSDGSVGDWTKSPPGGSIFVDPREV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0372 416 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 50 176 IPR016181 -
Lele50g0372 416 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 9 193 IPR000182 GO:0016747
Lele50g0372 416 FunFam Probable N-acetyltransferase HLS1-like 18 181 - -
Lele50g0372 416 Pfam Acetyltransferase (GNAT) family 57 174 IPR000182 GO:0016747
Lele50g0372 416 CDD NAT_SF 60 152 - -
Lele50g0372 416 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 6 416 - -
Lele50g0372 416 Gene3D - 40 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0372 Lele-ChrLele50 2121020 2122675 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele50g0372 Acetyltransf_1 8.7e-17 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0198 53 1658840 1662078 Lele50g0372 50 2121020 2122675 CCT
Lele54g0202 54 1741008 1744207 Lele50g0372 50 2121020 2122675 CCT
Lele55g1287 55 19342249 19345488 Lele50g0372 50 2121020 2122675 CCT
Lele56g1236 56 15698061 15701215 Lele50g0372 50 2121020 2122675 CCT
Lele50g0372 50 2121020 2122675 Lele50g0372 50 2121020 2122675 ECH
Lele50g0372 50 2121020 2122675 Lele51g0362 51 2079677 2081713 hybridization
Lele50g0372 50 2121020 2122675 Lele52g0374 52 2203841 2205497 hybridization