Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0358 ATGACCTCAATCAAGGAAAATGAAATGCAAATTTGTGTTCATGGGATGATAACTAATAGGGTTCTAGTAACTCTCTCATCTTCACTTTCTTCATTTCGTTTTCAAACTCTCACCAGAAACCCCGGGATCCAAAACCCTACCTCACAAAACTTTCGTATTTTTGCTGTGGCCTTAGAACAGCCACAAGAACTTCCTAAAAATAGTCCTCAACGACTTCTGAAGGAGCTCGCTGAACAGGTTTCTCAATTGTCCCTCAAATTGTTTCCTTTATTGAGTTCTTGCTTACCTTCTTCTCGGCTTAACAATGCTGATAAGACATGGATGGACGAGTACTTGCTCGAAGCGAGGCAAGCTCTGGGATATTCACTTGAGCCGTCAGAAAACCTCGGGGATGATAATCCGGCAAAGCAATTCGATACGTTGCTATACTTGGCGTTTCAACATCCATCGTGTGAGAGAACGCAGACAAGGCACGTGAGGTCCGGCCATACTAGGCTATTGTTTTTAGGGCAGTATGTTCTTCAGTTGGCGCTTGTAGAATACTTCTTACAGATATATCCGAGGGAGTCACCAGGTCCAATGCGGGAGAGGTTGGTGAGAAAGGAAAGGGAAGGACCCGTAAAGTTTGTATTTTGGGCTTTGTTTGGTGCAATCTATCTGTGTTTTGGTATTCCTGAATTATATCGCGTTCTTTCTGAAGCCTTTGGAAGGGATCCAGATGCTGAGGATCGCAAACCCAGATTATGTAGACAACTTGAAGATGTAGATTATGTATCTGCTGAATTTGATGGCAAGCTTAGCTGGCAAGATGTGGCTGCATACAAGGCAAGGCTCTTCGGAGCCTGTGTTCCTCCACTTTGGGATTATGATAGCAGACCACAGGTTATGCAAGCTCTGGGATATCCCTTAGATTTGACAGATAGCATTCAAGAAATTACTGAAGCTCGGGATATAGAACTTGGACTTGGGTTACAGCTAGCTCTAATATTGCCTCTCATTCTTTTGAATTTAGATGAGACTGTAGATTCTTTTCAGTTCCTTTTCCTTATTTCCATTTTCATCATTCCTCTCATGGCAGCATATCTGAAGCTTTGTTTCTTGCATCCATCGAAATACAAATTTGAGCATCCTCGATTTTGCTATGAGAGAATAGAATACCTTGGCCAAAAGATACAGGATTTGGTGATGGCTGAACGATTGTTGATGAAGCATTTAGATGCTCCAGGTTTGTGGCTACAGGAGAGGCACCTTCGCCTTCTGATGAACAAGTACTGTGGAAGATATTTGAGGGACAAACGTCTCCACCGTTTCATCATATATTCTGAACAGGTACAGGACCGTTATGAGCATAACCGGAGAATGAGGAACCCTGCCACGACAGCGGTTCAGCAAGCCATTCATGGTCTTGCATATGCTGTTTATGGGAAACGTGATGTAAGACGGCTAATGTTTGAAGAATGTGACTTTGAGCAGATTCACCCTAAAGCTGTATGA 1494 0.4304 MTSIKENEMQICVHGMITNRVLVTLSSSLSSFRFQTLTRNPGIQNPTSQNFRIFAVALEQPQELPKNSPQRLLKELAEQVSQLSLKLFPLLSSCLPSSRLNNADKTWMDEYLLEARQALGYSLEPSENLGDDNPAKQFDTLLYLAFQHPSCERTQTRHVRSGHTRLLFLGQYVLQLALVEYFLQIYPRESPGPMRERLVRKEREGPVKFVFWALFGAIYLCFGIPELYRVLSEAFGRDPDAEDRKPRLCRQLEDVDYVSAEFDGKLSWQDVAAYKARLFGACVPPLWDYDSRPQVMQALGYPLDLTDSIQEITEARDIELGLGLQLALILPLILLNLDETVDSFQFLFLISIFIIPLMAAYLKLCFLHPSKYKFEHPRFCYERIEYLGQKIQDLVMAERLLMKHLDAPGLWLQERHLRLLMNKYCGRYLRDKRLHRFIIYSEQVQDRYEHNRRMRNPATTAVQQAIHGLAYAVYGKRDVRRLMFEECDFEQIHPKAV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0358 497 Coils Coil 496 497 - -
Lele50g0358 497 ProSiteProfiles Ribonuclease III family domain profile. 112 194 IPR000999 GO:0004525|GO:0006396
Lele50g0358 497 SUPERFAMILY RNase III domain-like 361 484 IPR036389 GO:0004525|GO:0006396
Lele50g0358 497 SUPERFAMILY RNase III domain-like 107 235 IPR036389 GO:0004525|GO:0006396
Lele50g0358 497 CDD RIBOc 361 485 IPR000999 GO:0004525|GO:0006396
Lele50g0358 497 CDD RIBOc 140 243 IPR000999 GO:0004525|GO:0006396
Lele50g0358 497 FunFam Ribonuclease III domain-containing protein RNC1, chloroplastic 356 490 - -
Lele50g0358 497 Gene3D Ribonuclease III domain 137 204 IPR036389 GO:0004525|GO:0006396
Lele50g0358 497 Gene3D Ribonuclease III domain 358 488 IPR036389 GO:0004525|GO:0006396
Lele50g0358 497 SMART riboneu5 140 244 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0358 Lele-ChrLele50 2049178 2054970 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0358 50 2049178 2054970 Lele53g0181 53 1507466 1514443 CCT
Lele50g0358 50 2049178 2054970 Lele54g0183 54 1563643 1568567 CCT
Lele50g0358 50 2049178 2054970 Lele55g1304 55 19489352 19495129 CCT
Lele50g0358 50 2049178 2054970 Lele56g1253 56 15852715 15857683 CCT
Lele50g0358 50 2049178 2054970 Lele50g0358 50 2049178 2054970 ECH
Lele50g0358 50 2049178 2054970 Lele51g0352 51 2009824 2012909 hybridization
Lele50g0358 50 2049178 2054970 Lele52g0363 52 2126312 2134617 hybridization