Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0357 ATGCATGAACCAGCCATACTTCTCCGTTTATCGCTAGTGTGCGCACTCGTCGCCTTGCGTGCACCGGTTGCGCACCCACCTAACGTGCGCATCCTCTACTTGCCCATCCTCCCGATTGATACTATCGCCACCCCCACTACCATCCTCCACCTGTGCAACAAGCCCAATTACCATACGGGCGAGATCTCGGATCTTTATTGCCGAGCCATGTCGAAGGCGCGCGTCTACGCGGATGTCAATGTCCTTCGCCCCAAGGAGTATTGGGATTACGAGTCTCTCACCGTTCAGTGGGGTGATCAAGATGATTATGAGGTCGTGCGGAAAGTAGGAAGGGGAAAGTATAGTGAGGTGTTTGAAGGCATCAATGTTAATAGCAACGAGCGCTGTGTAATTAAGATTTTGAAGCCAGTAAAAAAGAAGAAGATTAAAAGAGAGATTAAAATACTCCAGAACCTTTGTGGGGGCCCAAATGTTGTCAAGCTTCTTGATATTGTTAGAGATCAGCATTCAAAAACCCCCAGCTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATCTACGAGCTCCTTAAGGCCTTGGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCACAATGTTATGATAGACCATGAATTGCGAAAACTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTCAAGGGGCCTGAACTTTTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTCCGCAAGGAACCATTCTTTTATGGGCATGACAACCATGATCAACTTGTGAAGATAGCTAAGGTGCTTGGAACTGATGAATTGAATGCATATCTGAATAAGTATCATCTAGAGCTTGATCCTCAACTCGATGCACTTGTTGGAAGGCACAGTCGGAAACCCTGGACTAAATTTATTAACGCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATCGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGATCGGTTTACTGCAAGAGAAGCTATGGCACATCCATATTTCTTTCAGGTAAGGGCTGCAGAAAGTAGCAGAATGAGGACACAGTAA 1209 0.4409 MHEPAILLRLSLVCALVALRAPVAHPPNVRILYLPILPIDTIATPTTILHLCNKPNYHTGEISDLYCRAMSKARVYADVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWTKFINADNQHLVSPEAIDFLDKLLRYDHQDRFTAREAMAHPYFFQVRAAESSRMRTQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0357 402 Gene3D Transferase(Phosphotransferase) domain 1 180 388 - -
Lele50g0357 402 FunFam Casein kinase II subunit alpha 180 391 - -
Lele50g0357 402 SMART serkin_6 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0357 402 SUPERFAMILY Protein kinase-like (PK-like) 76 391 IPR011009 -
Lele50g0357 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Lele50g0357 402 Gene3D Phosphorylase Kinase; domain 1 103 179 - -
Lele50g0357 402 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Lele50g0357 402 PANTHER CASEIN KINASE II SUBUNIT ALPHA 68 398 IPR045216 GO:0004674|GO:0006468
Lele50g0357 402 FunFam Casein kinase II subunit alpha 89 179 - -
Lele50g0357 402 CDD STKc_CK2_alpha 84 388 IPR045216 GO:0004674|GO:0006468
Lele50g0357 402 Pfam Protein kinase domain 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0357 402 ProSiteProfiles Protein kinase domain profile. 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0357 Lele-ChrLele50 2043288 2047370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0357 101 388 Core Cell Cycle Gene Families AT1G76540 29.773 1.29e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lele50g0357 Pkinase 2.5e-65 CL0016