Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0351 ATGTTCCCGTGTCCAATCTGTAGAGCTCATGGTTTCAGCAGTAACACGGAGTCAGCTGGGACCGATTTCCCGGTGGAAAATGCGTACGAGCTGTTAGGAGTGTCACAGACCAGTTCGTTTGCTGAGATCAAAACGTCTTTTCGCAGATTGGCCAAGGAAACTCACCCTGAACTTGCTGACTCAAATGACGATTCTTCTACGTCGCGACGATTTGTGCAAATCCTGGCCGCTTACGAGATTCTATCAGATTCCAAGAAGAGAGCTCACTATGACAGATACCTGTTGTCTCAAAAGAAGCTTGTGGAGAAGCATACTGGTCAGGGTTCAAAATTACACTTCTATAGATCACATGAAACAACTTGCAAGGAGATGGAAGTTGTTGAATGGTTAAAGTGGTACAGATTAGCTATAAATGATATTTTGTCAGATAAGAGGGTAGTAGTTGGAACAGGCTATTTTGATGTACTTGAGAGAGATTTTTACTCAGCCATACATGCGGCTTTCTTTGGCCCTGAAATTGAGTCAACGGAGCTTCTTCCTGAGTGCTTTGAGGCTGAAGAAAGGTCCACTTGTGAAACACCAGAGGTTTTACACATAGTATCAGGTCGTGATCTTTTTGGGATGGTTTGCCTAGCCAATAAGAACCCAGAGATATCATCTACCAACAATGAAAAGTTAACTTCTTTCAGATCCTTCCATCCGGGCCTATGTCAATCTATAAAGAATACAAACATCCACACAAATGCAGAAGTTCCATATGGATTTGGAATTCCACAAATTCATGACCCTAAAATATCAAGTCACATATCAGATGCATATAGAGATCTAGAGTTGCATGTCTCTGGAAGGGTGGTAGCTGTGGCCTCCAGGGTCCCTCCTGGAAGCTATTCTGATGCTAAAGTTGCAGAAGATCACATTCATGTTTATCTTTATTCAGATGAACACACCAAGCATACAAACAGCTGTGACTCTAAAAATTTCTTCGCAAGTAAATCAGCTGTCACACGAATTCATATAGGAACCATAGCTGGGCTTGGGACCAGTCCAGATGAAAGTTCATGTAATGTCTACGACAGTAGAGGGGCCAAGACCCATGTGATCATGAAACACAGGACCTTGCTGGTGAAGCACATGCACTGGTATCAAGTTAGAAAAAAAGTTTCTATTTGTGAGTGTAGATGCACGAGAGCCAAATTACCACCAAGCAAATTTTGGCTATTTGAGCCTCGTTGTGGTTTGCATGACATAGGGGGTTGGTATGTTGAAACATATGGCAAAGATAAGAAAGGGCGAACAATCCCATCACAAAGGTTATGGGATGGCTGGGATGATGGTCTGCATTTTGAGAGAAGACTTCATCCAGCAATGTATCTTCTTGCTCTTGCATATAGGACACTTGATCTTGAATATGCCAAAGTAAGAAAACAAACATTTAGGAAGGCTGTGGAAGGGCACCTATTTAGAATCCTTCATTGGTGCAAAAGACTTGGTTAA 1494 0.4224 MFPCPICRAHGFSSNTESAGTDFPVENAYELLGVSQTSSFAEIKTSFRRLAKETHPELADSNDDSSTSRRFVQILAAYEILSDSKKRAHYDRYLLSQKKLVEKHTGQGSKLHFYRSHETTCKEMEVVEWLKWYRLAINDILSDKRVVVGTGYFDVLERDFYSAIHAAFFGPEIESTELLPECFEAEERSTCETPEVLHIVSGRDLFGMVCLANKNPEISSTNNEKLTSFRSFHPGLCQSIKNTNIHTNAEVPYGFGIPQIHDPKISSHISDAYRDLELHVSGRVVAVASRVPPGSYSDAKVAEDHIHVYLYSDEHTKHTNSCDSKNFFASKSAVTRIHIGTIAGLGTSPDESSCNVYDSRGAKTHVIMKHRTLLVKHMHWYQVRKKVSICECRCTRAKLPPSKFWLFEPRCGLHDIGGWYVETYGKDKKGRTIPSQRLWDGWDDGLHFERRLHPAMYLLALAYRTLDLEYAKVRKQTFRKAVEGHLFRILHWCKRLG 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0351 497 SMART dnaj_3 26 86 IPR001623 -
Lele50g0351 497 SUPERFAMILY Chaperone J-domain 26 97 IPR036869 -
Lele50g0351 497 CDD DnaJ 27 83 IPR001623 -
Lele50g0351 497 ProSitePatterns Nt-dnaJ domain signature. 71 90 IPR018253 -
Lele50g0351 497 Gene3D DnaJ domain 18 113 IPR036869 -
Lele50g0351 497 Pfam DnaJ domain 27 91 IPR001623 -
Lele50g0351 497 ProSiteProfiles dnaJ domain profile. 27 94 IPR001623 -
Lele50g0351 497 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 8 496 - -
Lele50g0351 497 PRINTS DnaJ domain signature 66 86 IPR001623 -
Lele50g0351 497 PRINTS DnaJ domain signature 29 47 IPR001623 -
Lele50g0351 497 PRINTS DnaJ domain signature 47 62 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0351 Lele-ChrLele50 2014365 2017755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0351 29 91 C2H2 Transcription Factor Family AT1G74250 43.939 1.87e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0351 50 2014365 2017755 Lele50g0351 50 2014365 2017755 ECH
Lele50g0351 50 2014365 2017755 Lele51g0346 51 1973323 1976816 hybridization
Lele50g0351 50 2014365 2017755 Lele52g0357 52 2098397 2102638 hybridization