Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0348 ATGCTGGAATTCTGCCGAAGGCCATTAGAGACATGCTTTGGTGGAGGAGACAACGATTCGCTTCTCTGGCATACGGCCTTGAAGCCCCACGCTTTAGGTGATTATTCAATTGCTGTAGTTCAAGCTAACTCCTCTCTTGAAGACCAAGCTCAAGTTCTTGCCTCTCCTTCTGCAACTTATGTTGGGATATATGACGGACATGGCGGCCCCGAAGCTTCCCGTTTCATCACCAACCATCTCTTCCCCATTCTCCAGAAGTTTGCTTCTGAAGAAGGTGGTCTGTCGGAGGACGTGATAAAGAAAGCCTTTAATGAAACTGAAGAGGAATTCTTACAGTTTGTGAAGCAATCAGTGACTACTCGGCCGCAGATTGTTTCAGTGGGTTCATGTTGTCTTGTTGGGGTGATTTCTAACAACGTTCTTTATGTTGCTAATCTTGGGGATTCGAGGGCAGTTCTGGGAAAGAAAGTTAATTGTTCTGTGGTGGCAGAACGCTTGTCCACTGATCATAATGTTGCAGTTGAAGAGATTAGAAAGGAAGTTATGGCACTTCACCCCGATGATGAGCACGTTGTGGTTCACACTCAGGGTGTTTGGAGAATCAAGGGCATTATTCAGCTGTATTACATATTCCCTGTACCTGTACGTGTCTGCATATTGGTTCTGTTGGTCATCTTGGTTTTGGTTCATTTCTGTTTTGTGGATCTTTTGTCTGCTTTCGTTCTTTCTGCAACATTATGCTTGCAGATTATCAGCTTTCCTTTTATGGTAAATGGTTACGTGTCAAGATCAATTGGAGATGTTTTTCTAAAGAAACCTGAGTTTAACAGAGATCCTCTGTTCCAACAATTTGGATATTTGTTGCCCTTAAAGCGACCTGTAATGACAGCTGAGCCATCAATATTGACTCGAAAGTTAAAACCAGACGACATGTTCTTGATATTTGCATCTGACGGCCTTTGGGAGAATTTGGCCGATGAAGCAGCCGTTGACATCATCTTCAAAAATCCAAGACCTGGAATAGCGAAACGATTGGTGCGAGCTGCACTCGAAGAGGCTGCAAGGAAGAAAGAAATGAGATATAAGGATTTGGTGAGAGTTGAGAAAGGTGTTAGGCGGCATTTTCATGATGATATTACAGTGATCGTCATGTACTTGGATCATTCACAGGATTCATTGAGCGGGTTGAAACGACATGGCGTCTATGATGATTGCACTAATGCTCCTGTTGACATCTTCTCTCTAAATGCAGATAAAGATGATCTCTAA 1269 0.431 MLEFCRRPLETCFGGGDNDSLLWHTALKPHALGDYSIAVVQANSSLEDQAQVLASPSATYVGIYDGHGGPEASRFITNHLFPILQKFASEEGGLSEDVIKKAFNETEEEFLQFVKQSVTTRPQIVSVGSCCLVGVISNNVLYVANLGDSRAVLGKKVNCSVVAERLSTDHNVAVEEIRKEVMALHPDDEHVVVHTQGVWRIKGIIQLYYIFPVPVRVCILVLLVILVLVHFCFVDLLSAFVLSATLCLQIISFPFMVNGYVSRSIGDVFLKKPEFNRDPLFQQFGYLLPLKRPVMTAEPSILTRKLKPDDMFLIFASDGLWENLADEAAVDIIFKNPRPGIAKRLVRAALEEAARKKEMRYKDLVRVEKGVRRHFHDDITVIVMYLDHSQDSLSGLKRHGVYDDCTNAPVDIFSLNADKDDL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0348 422 ProSitePatterns PPM-type phosphatase domain signature. 60 68 IPR000222 GO:0043169
Lele50g0348 422 SUPERFAMILY PP2C-like 37 388 IPR036457 -
Lele50g0348 422 Gene3D - 24 393 IPR036457 -
Lele50g0348 422 Pfam Protein phosphatase 2C 53 174 IPR001932 -
Lele50g0348 422 Pfam Protein phosphatase 2C 257 355 IPR001932 -
Lele50g0348 422 SMART PP2C_4 24 384 IPR001932 -
Lele50g0348 422 PANTHER PROTEIN PHOSPHATASE 35 384 - -
Lele50g0348 422 CDD PP2Cc 41 386 IPR001932 -
Lele50g0348 422 ProSiteProfiles PPM-type phosphatase domain profile. 34 386 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0348 Lele-ChrLele50 1994901 1997970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0348 16 392 PP2C-type Phosphatase Gene Family AT3G51370 44.301 9.90e-109 323
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0348 50 1994901 1997970 Lele53g0174 53 1457521 1458461 CCT
Lele50g0348 50 1994901 1997970 Lele55g1310 55 19540104 19541044 CCT
Lele50g0348 50 1994901 1997970 Lele56g1261 56 15910740 15912010 CCT
Lele49g0330 49 1941547 1943859 Lele50g0348 50 1994901 1997970 ECH
Lele50g0348 50 1994901 1997970 Lele50g0348 50 1994901 1997970 ECH
Lele50g0348 50 1994901 1997970 Lele51g0344 51 1957834 1960771 hybridization
Lele50g0348 50 1994901 1997970 Lele52g0353 52 2079784 2082742 hybridization