Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0343 ATGACGCGGGAATCAGCTCAGCGAATCTTTACCTTCTCCCTAATCCTATGCCTTGCGCAGTTCGGCCCCCGGATTCTGGTCGGTGTCTCCGGCGATCCTAGCCACATTTTGCACTTCAGGAAGCTCCACGAAGGCGCTCGCCCAGCTATGATATTGCCGCTGTATTTCTCTGTTTCCAATTCTTCCATTTCCGCCTTCGATTCCCGTCGCCAACTCCAGAGATCCGAGGCCCAACACCACCCGAACGCTCACATGGGGCTTCATGATGATCTTCTCCTTAACGGGTACTATACTACGCGGCTTCGCATCGGGACTCCTCCGCAGATGTTTGCTCTTATTGTTGATACGGGAAGTACTGTGACGTATGTCCCGTGCTCTACCTGCGAACAGTGTGGCACGCACCAGGACCCGAGGTTCCAGCCAGAATTGTCAAGCACATATAAACCTGTCAAATGCTCATTGGACTGCAACTGCGACAGTGACAGAAATCAGTGCACATATGAGAGACAGTATGCTGAAATGAGTACTAGCAGTGGTGTCCTTGGTAATGATGTCGTATCCTTTGGAAATCAAAGTGAGCTTGACCCTCAACGTGCTGTTTTTGGTTGTGAAAATCTTGAGACTGGTGATCTTTATAGTCAGCATGCTGATGGCATCATGGGTTTGGGCCGTGGAGATCTCAGTATTGTGGATCAACTAGTTGAAAAAAATGCAATAAGTGATTCGTTTTCACTATGCTATGGTGGAATGGATTTTGGCGGGGGTGCTATGGTTCTTGGTGGAATATCTCCCCCATCAGACATGGTCTTTGCATATTCAGATCCTGTGCGCAGTCCATACTACAATGTCGATTTGAAGGAAATACACGTTGCTGGGAAGAAGCTGTCTTTAAACCCAAAGGTTTTTGATGGAAAACATGGAGCTGTGTTGGATAGTGGTACAACGTATGCGTACCTACCTGAAGAAGCGTTCCTGGCATTTAAAGATGCTATTAAGAAGAAACTTCAGTCTCTCAAGCAAATACCTGGTCCAGATCCCAATTATAACGATATATGCTTTGCCGGTGCTGAAATTTCTGTTTCACAACTCTCTGAAAGCTTTCCAACAGTTGACATGGTATTTGGAAATGGAAATGATCACAAGTTGTCTCTGTCACCTGAAAACTACTTATTCAGGCATTCCAAAGTGCGAGGCGCATATTGTCTTGGGATTTTCCAAAATGGAAAGGATCCAACCACTCTTCTAGGAGGTATCTTTGTTCGAAACACTCTTGTAATGTATGATCGAGAGAATGCAAGGGTTGGTTTCTGGAAGACTAATTGTTCGGAGTTATGGGAAAGGCTACAGTTATCTGCTTCCTCGCCGCCAGAGTCTTCTGAAGGAGCAAATTCTACTGAAGTTTTTGCGCCTTCAGTTGCTCCATCTGCATTACAGCATGATTTACATCCAGGGGAACTCCAAATTGCGCAATTAACATTTGAAATTTCATTTAACATCAGCTACTCAGACATGAAAGATCAGATTACAGACCTGGCTGGACTCATAGCTCATGAGTTAGATGTTAACACCTCACAGGTCCACTTATTGAATTGTTCTTCTCTCGGAAGTGGTTCCCTCTCTAGATGGGCCATAACCCCAGATACATCTTCTGATTTCATGTCTAACACAACTGCGATGAGTATAATTTCCCTGCTTGCTGAGCAGCGCATGCAACTTCCTAGCACCTTTGGAAGTTATAAGTTGGTTGGTTGGAATGTCGAGCCTCCATCAAAATGGACGTGGTGGCAGCAATATAGTTTGGTGGCGACTTTGGCTGTTTTAGTCACGTTGCTTCTTGGATTATCAGCTACTGGAATATTCTTAATTTTGAAAAAAAGACAGCAGCAAGTTGTGCATTCATACAAGCCAGTAGGCGTTTCTGCTCCAGAGCAGGAACTTCAACCGTTGTGA 1950 0.4518 MTRESAQRIFTFSLILCLAQFGPRILVGVSGDPSHILHFRKLHEGARPAMILPLYFSVSNSSISAFDSRRQLQRSEAQHHPNAHMGLHDDLLLNGYYTTRLRIGTPPQMFALIVDTGSTVTYVPCSTCEQCGTHQDPRFQPELSSTYKPVKCSLDCNCDSDRNQCTYERQYAEMSTSSGVLGNDVVSFGNQSELDPQRAVFGCENLETGDLYSQHADGIMGLGRGDLSIVDQLVEKNAISDSFSLCYGGMDFGGGAMVLGGISPPSDMVFAYSDPVRSPYYNVDLKEIHVAGKKLSLNPKVFDGKHGAVLDSGTTYAYLPEEAFLAFKDAIKKKLQSLKQIPGPDPNYNDICFAGAEISVSQLSESFPTVDMVFGNGNDHKLSLSPENYLFRHSKVRGAYCLGIFQNGKDPTTLLGGIFVRNTLVMYDRENARVGFWKTNCSELWERLQLSASSPPESSEGANSTEVFAPSVAPSALQHDLHPGELQIAQLTFEISFNISYSDMKDQITDLAGLIAHELDVNTSQVHLLNCSSLGSGSLSRWAITPDTSSDFMSNTTAMSIISLLAEQRMQLPSTFGSYKLVGWNVEPPSKWTWWQQYSLVATLAVLVTLLLGLSATGIFLILKKRQQQVVHSYKPVGVSAPEQELQPL 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0343 649 Gene3D Acid Proteases 72 260 IPR021109 -
Lele50g0343 649 PANTHER ASPARTYL PROTEASES 60 435 IPR001461 GO:0004190|GO:0006508
Lele50g0343 649 CDD pepsin_A_like_plant 96 441 IPR034161 -
Lele50g0343 649 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 112 123 IPR001969 GO:0004190|GO:0006508
Lele50g0343 649 Pfam Xylanase inhibitor N-terminal 97 261 IPR032861 -
Lele50g0343 649 SUPERFAMILY Acid proteases 93 446 IPR021109 -
Lele50g0343 649 Pfam Xylanase inhibitor C-terminal 281 436 IPR032799 -
Lele50g0343 649 Gene3D Acid Proteases 268 445 IPR021109 -
Lele50g0343 649 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Lele50g0343 649 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190|GO:0006508
Lele50g0343 649 PRINTS Pepsin (A1) aspartic protease family signature 103 123 IPR001461 GO:0004190|GO:0006508
Lele50g0343 649 PRINTS Pepsin (A1) aspartic protease family signature 255 268 IPR001461 GO:0004190|GO:0006508
Lele50g0343 649 FunFam Aspartyl protease family protein 81 260 - -
Lele50g0343 649 FunFam Eukaryotic aspartyl protease family protein 268 445 - -
Lele50g0343 649 ProSiteProfiles Peptidase family A1 domain profile. 97 437 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0343 Lele-ChrLele50 1978306 1982916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0343 71 444 Miscellaneous Gene Families AT1G77480 29.665 2.13e-32 128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0343 50 1978306 1982916 Lele53g0166 53 1385059 1387746 CCT
Lele50g0343 50 1978306 1982916 Lele54g0167 54 1439657 1443733 CCT
Lele50g0343 50 1978306 1982916 Lele55g1317 55 19612602 19615264 CCT
Lele50g0343 50 1978306 1982916 Lele56g1267 56 15972295 15978901 CCT
Lele53g0174 53 1457521 1458461 Lele50g0343 50 1978306 1982916 CCT
Lele55g1310 55 19540104 19541044 Lele50g0343 50 1978306 1982916 CCT
Lele56g1261 56 15910740 15912010 Lele50g0343 50 1978306 1982916 CCT
Lele50g0343 50 1978306 1982916 Lele50g0343 50 1978306 1982916 ECH
Lele50g0343 50 1978306 1982916 Lele51g0339 51 1940149 1945057 hybridization
Lele50g0343 50 1978306 1982916 Lele52g0350 52 2063062 2067736 hybridization