Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0342 ATGTACACCCAAATGTTATGTGGCCTCATCATGCGCCATGAAGTGCTCAGAGTTGGAGCCGTTTTTGCCTCCGGCCTTCTCAGAGCCATCCGATTCCTTCAGCTAAACTGGCAGCAACTGTCCCTTGACATCTCCACCGGAACCCTCAATCTCAAAATCACTGACCCGTCTCTTAAGGAGTGCATGGCCAAAATCCTGAAACCCGACCCCGAAATCGCAGATTTCATAACAAAAGAATGCTCCGGTGGAAACTGGGAAGGTATCATCACCAGAATCTGGCCTAACACAAAGTACCTTGACGTGATCGTCACGGGGGCTATGGCTCAGTATATTCCCACCCTGGACTATTACAGCGGTGGCTTGCCTAAGGCTTGTACCATGTACGCATCTTCCGAGTGTTACTTTGGGCTTAACCTAAACCCTATTTGCAAGCCGTCTGAGGTGTCCTACACCATCATGCCAAACATGGGTTACTTCGAGTTCTTGCCCCATGATGACTCATCATCAACTCCTTCCACTCTCTCACGAGACTCACCGCCTCGCCTTGTGGACCTAGCCGACCTCGAAGTTGGTAAATACTACGAGCTCGTTATCACCACCTACTCTGGCCTATGCCGTTACCGTGTGGGCGATATCCTCCAAGTCACGGGGTTCCACAACAAAGCCCCACAGTTCCGGTTCGTGAGGAGAAAGAACGTGCTATTGAGCATTGACTCCGACAAAACCGACGAGGCCGAGCTTCAAAAGTCCATTGAAAACGCATCGGTGTTACTGAAAGAATTTAAGACCAGCGTGGTGGAGTATACGAGCTTTGCCGACACGAAGAGTATTCCAGGACATTATGTTATTTACTGGGAATTGTTGATGAAGGACGCCTCTAACCCGCCTACCAATGAAGTCCTGAACCGGTGCTGCCTAGCCATGGAAGAGAGCCTTAACTCGGTTTATAGACAGGGGAGAGTGGCGGACCATTCTATTGGACCGTTAGAGATACGAGTGGTGAAGAATGGTACCTTTGAGGAACTGATGGACTACGCCATCTCAAGGGGAGCCTCTATCAACCAGTACAAAGTACCGAGGTGTGTTAGTTTCACTCCCATAATGGAACTACTCGACTCTAGGGTGGTCTCCGTTCATTTTAGCCCAGCTGTTCCCCACTGGACTCCCGAACGTCGTCGTTGA 1182 0.5017 MYTQMLCGLIMRHEVLRVGAVFASGLLRAIRFLQLNWQQLSLDISTGTLNLKITDPSLKECMAKILKPDPEIADFITKECSGGNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGGLPKACTMYASSECYFGLNLNPICKPSEVSYTIMPNMGYFEFLPHDDSSSTPSTLSRDSPPRLVDLADLEVGKYYELVITTYSGLCRYRVGDILQVTGFHNKAPQFRFVRRKNVLLSIDSDKTDEAELQKSIENASVLLKEFKTSVVEYTSFADTKSIPGHYVIYWELLMKDASNPPTNEVLNRCCLAMEESLNSVYRQGRVADHSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRCVSFTPIMELLDSRVVSVHFSPAVPHWTPERRR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0342 393 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 1 384 IPR004993 -
Lele50g0342 393 Pfam GH3 auxin-responsive promoter 1 363 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0342 Lele-ChrLele50 1969554 1970735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0342 1 381 EF-hand Containing Proteins AT1G23160 50.643 3.23e-138 405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0324 49 1911046 1913104 Lele50g0342 50 1969554 1970735 ECH
Lele50g0342 50 1969554 1970735 Lele50g0342 50 1969554 1970735 ECH
Lele50g0342 50 1969554 1970735 Lele51g0337 51 1924847 1926887 hybridization
Lele50g0342 50 1969554 1970735 Lele52g0349 52 2054672 2056717 hybridization