Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0318 ATGGATTGGCGTTTGGCGTCCATTTTCAAACACGGGGTGGCCTATGAACCCCCATTCACTAGCGTCACAGTTCGGTCACCTTGGCCACCAAAATCACCCACTTGGCCTCTCCACCTTTTATTTCCTTCCTTCCTTCTTTTTTTTGTTTTCTTGGTCTCAAGCCGATACAATCTATTTGACCAGGTTTCTCGCTTTATCATTACCATTTCATTTGCTCTTTGCTCCTTCACATCTTCTGCGCCTCTCTGCCTCTTTCATGGTTCTGTGAGTATGGCCGTGGAGCTCATGATGGGTTACAGGAACGATAGCTTCGCGGCCAAAATGGATGATAATGTAGTTCAGGAAGCTGCGTCTGGCCTGGAGAGCGTTGAGAAGCTCATCAGGTTGCTTTCTCAGAGTCAGCAACAATTCCAGTCTTCTTCTTCCGCTTCAAAGTCTTGCGTGGAAATCGAGATGGACTGTAAAGCCGTAGCGGACGTCGCCGTTTCCAAGTTCAAGAGGGTGATTTCTCTTCTGGGTCGAACCAGAACCGGTCATGCTCGATTTAGAAGAGCCCCTTTGCCGCCGTCTCCCCCTCCTCCTCCTACCGTTAATCAAAACCCTGAGCCGCAACCTTGGGAACCCAAAGTTTATCATGCGACGCCGTTGCAGCAGATCCCACCGGCCCTTCTTCAACACCAAAATATCGGCGAACAACATCCCCTGATCCCCAAAAATGGGGTGATTGATAGGAAGGACTCGTTCAAGAGCATTAATTTCTCGTATTCCTCCGCCGCGACGTCGTTTATGTCGTCTCGTACTGGCGATACTGATAGTAAACAACCGTCCTCGTCTTCTCCGGCGACCGCTTTTCAGATCACGAATCTGTCTCAGGTCTCCTCAGCGGGAAAGCCTCCTCTTTCTTCTTCGCTGAAGAGAAAGTGCAGCTCCGAGAACGTGGGTTCCGGCAAGTGCGGCAGTTCCTCTAGTCGTTGCCATTGTTCTAAAAAGAGCAGGAAAATGAGGTTGAAGAGGGTAGTGAGGGTGCCCGCAATAAGCTTGAAGATGGCCGATATTCCACCTGATGATTATTCATGGAGGAAGTACGGACAAAAACCCATTAAAGGATCCCCTTATCCTAGAGGATACTACAAGTGCAGTAGCGTAAGAGGTTGTCCAGCACGCAAACACGTAGAGCGAGCTCTGGACGATCCATCGATGTTAGTAGTCACATATGAAGGCGATCATAATCACTTGCTTTCTGCGACCGATTCAACGAATCTCATACTGGAATCCTCTTAG 1281 0.4918 MDWRLASIFKHGVAYEPPFTSVTVRSPWPPKSPTWPLHLLFPSFLLFFVFLVSSRYNLFDQVSRFIITISFALCSFTSSAPLCLFHGSVSMAVELMMGYRNDSFAAKMDDNVVQEAASGLESVEKLIRLLSQSQQQFQSSSSASKSCVEIEMDCKAVADVAVSKFKRVISLLGRTRTGHARFRRAPLPPSPPPPPTVNQNPEPQPWEPKVYHATPLQQIPPALLQHQNIGEQHPLIPKNGVIDRKDSFKSINFSYSSAATSFMSSRTGDTDSKQPSSSSPATAFQITNLSQVSSAGKPPLSSSLKRKCSSENVGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGDHNHLLSATDSTNLILESS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0318 426 Pfam WRKY DNA -binding domain 355 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele50g0318 426 Pfam Plant zinc cluster domain 305 351 IPR018872 -
Lele50g0318 426 ProSiteProfiles WRKY domain profile. 348 414 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele50g0318 426 SMART WRKY_cls 353 413 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele50g0318 426 FunFam WRKY transcription factor 65 337 414 - -
Lele50g0318 426 SUPERFAMILY WRKY DNA-binding domain 350 411 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele50g0318 426 Gene3D WRKY domain 341 413 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele50g0318 426 MobiDBLite consensus disorder prediction 262 319 - -
Lele50g0318 426 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 111 418 IPR044810 GO:0003700
Lele50g0318 426 MobiDBLite consensus disorder prediction 179 207 - -
Lele50g0318 426 MobiDBLite consensus disorder prediction 185 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0318 Lele-ChrLele50 1853600 1855441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0318 107 411 WRKY Transcription Factor Family AT2G24570 44.923 2.34e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele50g0318 WRKY 1.7e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0318 50 1853600 1855441 Lele53g0146 53 1199051 1200025 CCT
Lele50g0318 50 1853600 1855441 Lele54g0147 54 1260298 1261275 CCT
Lele50g0318 50 1853600 1855441 Lele55g1340 55 19834094 19835062 CCT
Lele50g0318 50 1853600 1855441 Lele56g1289 56 16140560 16141534 CCT
Lele50g0318 50 1853600 1855441 Lele50g0318 50 1853600 1855441 ECH
Lele50g0318 50 1853600 1855441 Lele51g0312 51 1785612 1786993 hybridization
Lele50g0318 50 1853600 1855441 Lele52g0328 52 1932011 1933361 hybridization