Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0309 ATGACAATAGATACTTTACTGCACCTCGCTTTGTTAACATTGGAAGCTCTGCCTCGGGACAGAGTGCCCTCCTTAAGTCATGGCGATGCCATTCTCATAAGCCGGCTTCTTCTTTTTGGTTTTTCAATTTTTGTCTTCCACCTGAATGAAAACATACAGAAAGGGGGAGAGAGGGAAAGAACAAAAAAGAATCCCGCTGTGCTAGCTTCGTTTTGGTGCACCAAATTGAATGCTCGCAGAGTTTTGGAGGGATCCTCCTGTTCAGAGCTCCAATCGAGCCCCATGGACGACATGGCTGCCTACTACACACAATCCCAACCCTCGACTCATCATACTTTTCCATATTATCAACATCCTCATCCGTCGTCGCTTGCAGTGGTGCCACCACCACCTGGTGCGGCCCCTCCCGGCCCCCACCACCTTCCTTCGCAGTATGGGTCCTACCAGCAACCCCTTTTTGCGTCTTACGGACCTCCTAATCCTCTTCAGTATTCCGCCGACGAGGTTCGGACACTCTTCATCGCCGGCCTTCCCGAGGATGTGAAGCCTCGCGAAATCTACAATTTGTTTCGAGAGTTTCCCGGTTACGAGTCATCACATCTTCGGAGTCCCACTGACTCGTCGCAGGCTTTTGCTTTTGCTGTATTTGCTAATCAGCAATCTGCACTCATGGCAATGCATGCATTAAATGGGATGGTCTTTGACCTTGAAGAGGGGTCAACTCTATATATAGATTTAGCAAAATCCAACTCTAGGTCTAAGCGCACAAGAATAGATGATGAAATAGTTGGCTCAGATAAGAAGGCTAGAGGATCTTCTTTTCCAAGAGCAACTCCTGATTCCGGTGTTGGCAGCATACACATGCCTGGAATGGGTAATTCTGCTTACAACACAAACACGTATGGTTATCCACCTGCACAAAGCCAATGGTATGTTGATGATAAAGCTTTTAATGACAGTGCAGCAGCAAATTTGAATAACTCCTCACGTATTCCACAAAATGTGACCCCATGTCCAACTTTATTTGTGGCTAACCTGGGGCCATCTTGTAGCGAACAAGAGCTAATGCAAGTGTTTTCCAGATGTGCTGGATTTTTGAAACTGAAGATGCAGAGCACATATGGAGCTCCAGTTGCATTTGTTGATTTTCAGGATGTTGCCAGTTCAACTGGAGCTCTAAACAGTCTACAAGGCACCGTTCTTTACTCCTCAACGGCTGGCGAGGGAATGCGGTTAGCATATGCAAAATCACGGATGGGTATGCGGAAGAAGCCCAAGTAA 1281 0.4699 MTIDTLLHLALLTLEALPRDRVPSLSHGDAILISRLLLFGFSIFVFHLNENIQKGGERERTKKNPAVLASFWCTKLNARRVLEGSSCSELQSSPMDDMAAYYTQSQPSTHHTFPYYQHPHPSSLAVVPPPPGAAPPGPHHLPSQYGSYQQPLFASYGPPNPLQYSADEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTDSSQAFAFAVFANQQSALMAMHALNGMVFDLEEGSTLYIDLAKSNSRSKRTRIDDEIVGSDKKARGSSFPRATPDSGVGSIHMPGMGNSAYNTNTYGYPPAQSQWYVDDKAFNDSAAANLNNSSRIPQNVTPCPTLFVANLGPSCSEQELMQVFSRCAGFLKLKMQSTYGAPVAFVDFQDVASSTGALNSLQGTVLYSSTAGEGMRLAYAKSRMGMRKKPK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0309 426 FunFam RNA-binding protein with multiple splicing 331 422 - -
Lele50g0309 426 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 319 417 - -
Lele50g0309 426 MobiDBLite consensus disorder prediction 265 284 - -
Lele50g0309 426 Gene3D - 166 259 IPR012677 -
Lele50g0309 426 SMART rrm1_1 340 409 IPR000504 GO:0003723
Lele50g0309 426 SMART rrm1_1 171 245 IPR000504 GO:0003723
Lele50g0309 426 FunFam RNA-binding protein with multiple splicing 2 167 257 - -
Lele50g0309 426 Gene3D - 332 425 IPR012677 -
Lele50g0309 426 SUPERFAMILY RNA-binding domain, RBD 169 403 IPR035979 GO:0003676
Lele50g0309 426 CDD RRM_RBPMS_like 170 245 - -
Lele50g0309 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 404 IPR000504 GO:0003723
Lele50g0309 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 235 IPR000504 GO:0003723
Lele50g0309 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 249 IPR000504 GO:0003723
Lele50g0309 426 CDD RRM_scw1_like 337 416 - -
Lele50g0309 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 417 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0309 Lele-ChrLele50 1812410 1818960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0309 156 403 Eukaryotic Initiation Factors Gene Family AT4G34110 23.129 4.29e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0309 50 1812410 1818960 Lele53g0143 53 1168762 1169217 CCT
Lele50g0309 50 1812410 1818960 Lele54g0143 54 1233061 1233516 CCT
Lele50g0309 50 1812410 1818960 Lele55g1345 55 19862591 19863046 CCT
Lele50g0309 50 1812410 1818960 Lele56g1292 56 16170211 16170672 CCT
Lele50g0309 50 1812410 1818960 Lele50g0309 50 1812410 1818960 ECH
Lele50g0309 50 1812410 1818960 Lele51g0304 51 1738087 1746136 hybridization
Lele50g0309 50 1812410 1818960 Lele52g0319 52 1886069 1890511 hybridization