Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0308 ATGAAGATTCACTCTCTTCCACTCCCTTTGGATCAAACTCGCCGAGAGAGAGCGACGGACGGTGAAACGGCAGAAGGTGGAGTGGCAGATAGAGAGATGCCGACCAGGAAAAGACGGCCCGTTGAGATCGAAGGGGAGAGAAGATACAAAGGGATTAGGATGAGGAAGTGGGGCAAGTGGGTCGCCGAGATTCGAGAGCCCAATAAACGATCTAGGATTTGGCTCGGTTCCTACTCCACTCCCGTCGCGGCGGCGCGGGCCTACGACACCGCCGTTTTCTATCTCAGGGGACCATCGGCCCGCCTTAATTTCCCTGACCTTTTAGAAGGCGGCGGCGTTGGTGGCTGCGACTGCGACCTGTCGGCGGCTTCAATTAGGAAGAAAGCGACGGAGGTTGGCGCCAGAGTCGATGCTCTTCAGGCCGCTCTCCACCATCACCACCATGCATCGGTGTCGCCGGAGCTCATGTCACCCAGCGCAGGCGCCGGACCAGGCTCCGGGGAGTTTTTGGGGCGGGTTGATCTTAACGAGATACCAGAACCCGAGAATTCGGACAGCGCTGCGAGTGAGATAGGAAGCAGAAGCAATATCTATTCTGCAACTCAGCTCTTGCTTCTCCGACGGGAGAGAGGCTAA 636 0.5739 MKIHSLPLPLDQTRRERATDGETAEGGVADREMPTRKRRPVEIEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLEGGGVGGCDCDLSAASIRKKATEVGARVDALQAALHHHHHASVSPELMSPSAGAGPGSGEFLGRVDLNEIPEPENSDSAASEIGSRSNIYSATQLLLLRRERG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0308 211 MobiDBLite consensus disorder prediction 147 193 - -
Lele50g0308 211 PRINTS Ethylene responsive element binding protein signature 87 107 IPR001471 GO:0003700|GO:0006355
Lele50g0308 211 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Lele50g0308 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 39 185 - -
Lele50g0308 211 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Lele50g0308 211 FunFam Ethylene-responsive transcription factor 2 47 106 - -
Lele50g0308 211 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Lele50g0308 211 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Lele50g0308 211 MobiDBLite consensus disorder prediction 9 36 - -
Lele50g0308 211 CDD AP2 48 107 IPR001471 GO:0003700|GO:0006355
Lele50g0308 211 MobiDBLite consensus disorder prediction 1 36 - -
Lele50g0308 211 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Lele50g0308 211 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0308 Lele-ChrLele50 1806083 1806718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0308 26 185 AP2-EREBP Transcription Factor Family AT5G67190 56.284 4.04e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele50g0308 AP2 1.7e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0308 50 1806083 1806718 Lele50g0308 50 1806083 1806718 ECH
Lele50g0308 50 1806083 1806718 Lele52g0318 52 1881378 1882013 hybridization