Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0305 ATGTGGGATCTGAATGACTCGCCCGATTGGAGAAAGGACGAGGAATCCGAAGGCTGTTCTTCCTTGAAGACGTCCATGGACGGAGACGAGGACAAAGGGAAAAGGGTCGGATCTATGTCGAATTCAAGCTCATCTGCGGTGGTTATCCAGGACGGATCGGAAGAAGAGGACGGCGGGAGGAGCAAAACGCTGAAGAAGAAAAGCAGCAAGATATTCGGGTTCTGCGTGACCCAGGACGAGTCCATGGATAGTGACCCACCCTTGACCAGGCAGCTTTTGCCGGTGGAGGAGGAGGCGGTGTCGGCGGCCAAGTCATCGGGCGGAGGGAGCACGGCCTTCCCTCGGGCCCACTGGGTGGGCGTGAGATTCTGTCAGCCAGAAGCAGTCGGCGCCGGTGCCGTTGGAGAAGGAAAATCCGTGGAAGTGTCGTCGCAGCCGATGAAAAAGAGTCGGCGAGGACCAAGGTCAAGGAGCTCTCAGTATAGGGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCACATATATGGGACTGCGGAAAACAAGTGTATCTGGGGGGATTTGACACGGCACATGCAGCTGCTCGGGCATATGATAGAGCGGCCATTAAGTTCCGGGGGGTGGAGGCCGACATCAACTTCAACATTGAAGACTACGAAGAAGACTTGAAACAGATGAGCAATTTAACAAAGGAAGAGTTCGTGCACGTGCTTCGTCGACAAAGCACTGGGTTCCCCAGAGGAAGCTCCAAATTTAGAGGCGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTACGTTTATCTTGGTTTGTTCGACACCGAGATTGAAGCTGCAAGGGCTTATGACAAAGCAGCAATAAAATGTAACGGCAAAGAGGCCGTCACCAACTTCGATCCCAGCATCTATTCTGAATCACCGGGTAACACTGCGGATCACAATCTGGATTTAAGTCTGGGCAATTCGAGCTCAAAGCAAGGCAATAATAGTCAAGCACTGGGGAATAATAATGATGGATCCGAATCAAGTTGGAGGAACAATAATGGAGGATTAATGAGGCCAAAGTTGACAGTGCTGGAAGGAGGTCAAACTCAGCTTCAACAATCTGAAGCATCGAGAGAAATGCAAACATTTGGCGCCGCCTACAGCAGGAATACATCTAGAGAGCCTCATCATCAAATGCTCAACAGTTTTGCTCCATCACAACATCTTCACCCACCACCAAACTTTCATAATTATCCAAGCAGCAGCAGCGAAGGGGGGCGTATAGGGAGTGATCTTTCATTGTCAATGAGCGATCGTCATCATCAGCAATCGGAGCCTCCTCATCATCTTCATCAGGCTCATTATATTGCAACTGCGGCAGCATCATCAGGATTCCCAACGCAGATTAACAGACTTTCCCAAGGATGGCTGCAGAGAAGTGGGTTCCACACACTCATGAGACCCAACTGA 1485 0.5044 MWDLNDSPDWRKDEESEGCSSLKTSMDGDEDKGKRVGSMSNSSSSAVVIQDGSEEEDGGRSKTLKKKSSKIFGFCVTQDESMDSDPPLTRQLLPVEEEAVSAAKSSGGGSTAFPRAHWVGVRFCQPEAVGAGAVGEGKSVEVSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYSESPGNTADHNLDLSLGNSSSKQGNNSQALGNNNDGSESSWRNNNGGLMRPKLTVLEGGQTQLQQSEASREMQTFGAAYSRNTSREPHHQMLNSFAPSQHLHPPPNFHNYPSSSSEGGRIGSDLSLSMSDRHHQQSEPPHHLHQAHYIATAAASSGFPTQINRLSQGWLQRSGFHTLMRPN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0305 494 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677
Lele50g0305 494 MobiDBLite consensus disorder prediction 408 445 - -
Lele50g0305 494 MobiDBLite consensus disorder prediction 315 364 - -
Lele50g0305 494 CDD AP2 160 217 IPR001471 GO:0003700|GO:0006355
Lele50g0305 494 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700|GO:0006355
Lele50g0305 494 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700|GO:0006355
Lele50g0305 494 MobiDBLite consensus disorder prediction 408 452 - -
Lele50g0305 494 CDD AP2 251 311 IPR001471 GO:0003700|GO:0006355
Lele50g0305 494 SMART rav1_2 160 222 IPR001471 GO:0003700|GO:0006355
Lele50g0305 494 SMART rav1_2 252 315 IPR001471 GO:0003700|GO:0006355
Lele50g0305 494 FunFam AP2-like ethylene-responsive transcription factor 251 311 - -
Lele50g0305 494 FunFam AP2-like ethylene-responsive transcription factor 159 218 - -
Lele50g0305 494 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700|GO:0006355
Lele50g0305 494 MobiDBLite consensus disorder prediction 315 360 - -
Lele50g0305 494 MobiDBLite consensus disorder prediction 1 66 - -
Lele50g0305 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 89 398 - -
Lele50g0305 494 MobiDBLite consensus disorder prediction 1 36 - -
Lele50g0305 494 Gene3D AP2/ERF domain 159 218 IPR036955 GO:0003700|GO:0006355
Lele50g0305 494 Gene3D AP2/ERF domain 251 310 IPR036955 GO:0003700|GO:0006355
Lele50g0305 494 Pfam AP2 domain 160 208 IPR001471 GO:0003700|GO:0006355
Lele50g0305 494 Pfam AP2 domain 251 300 IPR001471 GO:0003700|GO:0006355
Lele50g0305 494 MobiDBLite consensus disorder prediction 134 160 - -
Lele50g0305 494 ProSiteProfiles AP2/ERF domain profile. 252 309 IPR001471 GO:0003700|GO:0006355
Lele50g0305 494 SUPERFAMILY DNA-binding domain 251 311 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0305 Lele-ChrLele50 1790471 1793017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0305 1 493 AP2-EREBP Transcription Factor Family AT4G36920 51.257 4.37e-130 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele50g0305 AP2 8.6e-10 CL0081