Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0295 ATGAACCATCAAGGTCAATACAATTCTAATGAAAGCATCCAAAGTGCGGCCAACCATTGGGAAGCCATGGGAGCCGTGTCCTCATCAAGTTCTCGTACCGGAAGCATTCAAAGTTCCCCAAATAGTCTTAATGGGCCGAATGTTCTCCCTGATCAAGAGCATCTTAATATTGTTCAAAGCAATGATCATGGTGCGGGTGTTGTCCGTCGTAACCTTGACTTAAATGCAGAATATGTGGTTAATAATGATTACACCAACAATCAGAATGCGTCAGCAGGTGAAACTTCTAGATCAGCTGTGCAAGCTAGGATCCCCATATCACAGTCTGCTACCGTCCAAGTCAATACCAGTAACAGCTTGAACATAGTAGCTCCTTATATTGGTGCTGCAAATATCCACCAACAACAGATTGATGCTGAATCTAGTCATGAGACTATAAGGCCAGTTTCTAACAAGCAACAATTGAATGAAGCTAGGCATGGTTCTGCTGATAGTTCTCTATTTTCATTTGAGACTGGAATTGATCATGGTATTACCAGGTCATTTTATGACATTCAACACTTCAGTCACACTAGACAAATCGGACTCTTTCACAGCAATAATCAGACAGATGCAAGTCCACCAGCCTTTGTGCCATCCAGCAATTTGTCTATGGGGCATGCAAGGAACTTTCATGCTCTCTTCCCCAGTCAAACGCCTCAATATTACCAACAAGACCATCCTCATTTCTTTAGCCAAACACAAGCTTCAGTAGGGGCAATTCCCTCTGGGCAGATATTTGTGCAATTTCCTGATTTTCATGACATCCTGCTGCCTGCCCCTTGGGTTAATGTTTTGGGGCCAATACTTGTTCGACCTCCATTTTCACCTGTTTATACCATGCCAGGAGGCGGAAACCCTGACAACATTCCAAGAACTATCATGCTTGGCTCTCAAACTGGAATGGGAGCTCAGTCACCTTATCTAGCAAACTTGAGTTTTGACCTTGGAACTGCTAACTTTCTTGGAAATTTCGCTTCCCCTTCCCATTATGGTCCTTTTACAGATAGTCATTTATTGAATGCTCCTACAGGTGTCCCTTGGTTCAATGCTTCCGAACAGCATATTCCAACGTTATCTGGAGTTGGGAACCCCTCTGCAGCCCCGCCTTTTGGTTTCCCAGTGCCAAGTATAAATAACCAACTAGGTTTAAACCCTCCAGCAATCTCTCAAGAAAGGAACTTGGCTATTGTAATTACTGGTGCTGGATTTCAGAACCAGTTAAGAATGTCGCAAAGATCTGAGAATCAATCTAATCTTAATACTGGACCTCCTTCTACTAATGAAGCTAGAAACAATCCGTTAACTCAGGGGAATAGGCAACCTGTACCTGGATTGAGTGAAGAAGATATCATGGCACACCTGAGGCTTGAAGAGTTCCATTGTACAGAGGCAACTCCAGAAGATGTTGAGTCCTGTTGCATTTGTCAGGAGAACTATGCTGATGGGGAGGACATTGGGGTGCTGGATTGCGGCCACAAGCTTCACTTCGATTGTGCCAAAAAATGGCTGCGCACCAAGAACACCTGCCCCATCTGCGTACGGACAGGCCTTGCTAGTCAAAAGGCTGCACGGGAAGACGTTGGGTTGAAAATGAAGAGCCCGTCCGTCCTCATCTGCTCATCGCCGTTGGATCTTCATCGGAGGCAGGGGAACAATATTCAAGGGGGTCGCTCTCCCAATCAAATCATATCTAATCACAAATCGGTAGAAGAAGAGTCTTCTGCCAACTCCGAGGAAGAAGAAAAGCATCCTCAGAGAAAAGCGACTAGAAAATATTCGACTACAAGAATGGGAGATATGTATCGCTATGATAATACTGAGAATCATAATTTCCCTGCGTCTTCAACCTCATATCTTTCCTCATCTTCACCTCAAGACGAAATCTCGCTTTTTCTGCGTCAGATTCTCCTTCGTTCATCCTCCTCGTCAGCATCATCCTCGCTGCCTGTGACCCACCCGGCTAAGAACGCCCACACCTCGGTGGCTGGACTCTGCAGTTCCCACGCTACGCTGGAGAATAATGCTCACCTTTCCCACCGATCATCACTTTTCCAAGATGGGATCTCCGTCTTTGATTCCTCCATCGGAGTAAGCGCTCCAAACGATGTTTTTCTTTCCTCTTCGGGGACTCATACGTTGGCCAACATGAAGGATAGTTCTGCGGTAAACTTGCCTTCTTCATCTTTTGGAGTAAGTGAGAATGAGTTCGATGAGTATGACTGCGAGAGTGAGGAGGGGGTCGAAGCATTGGTGGAACAGCAGCCGGTAAAGTCAGTTCCTCCGAGGAGTTCATCAAAGAGAAGCAGAGCTGCGGAAGTTCATAATTTGTCTGAAAAGATTCTGGCACCCCTGTCCTTGAATGAATCTTCACCTCTCTCATTTCACCCTGCTTCTATCAGATGTGAGACTACAGGATGTAGTAACATGCTGTCGATGAGAAATGGTTTGAGTTTGCCTCCTATGTGCTTTTCTGAAGACTTGCAGTCTCAGCAATTTTATCAGATGAGATCTGAACCCGGTGAAGAAAACAGGTCTTTGCCTTTAAACATGGCAACTACTCTGCCGTTGACCCAAGATAACCTCTTGCAATATGAGTCCAAATCCAATCTGCCTGACAAACTCAATACACAGGATGAACCATTAGTGCCCTCACCATCGTATACAATCAACCCAGAAACTTCTGTTGGGTTAGAATCCCCAATTCTGCCGCATATAAGATCCTTTCCACAGAAAAGAACTTCTGAGGCGCGTAGCAATGAGATATTGCGGCGCCAGCCATTAAATGCGAGCCATTCAGATACCAATCCTTTAGGTGGTTCTCAAGTATCGCACGCCTTCGATATGCAAACGCCCGAGCAGAAGGATAGGGTCTTTGAAACTGGCATTGCGGGAAAAGATCAATTGGGCATCGATCCTAAGAAATAG 2967 0.4533 MNHQGQYNSNESIQSAANHWEAMGAVSSSSSRTGSIQSSPNSLNGPNVLPDQEHLNIVQSNDHGAGVVRRNLDLNAEYVVNNDYTNNQNASAGETSRSAVQARIPISQSATVQVNTSNSLNIVAPYIGAANIHQQQIDAESSHETIRPVSNKQQLNEARHGSADSSLFSFETGIDHGITRSFYDIQHFSHTRQIGLFHSNNQTDASPPAFVPSSNLSMGHARNFHALFPSQTPQYYQQDHPHFFSQTQASVGAIPSGQIFVQFPDFHDILLPAPWVNVLGPILVRPPFSPVYTMPGGGNPDNIPRTIMLGSQTGMGAQSPYLANLSFDLGTANFLGNFASPSHYGPFTDSHLLNAPTGVPWFNASEQHIPTLSGVGNPSAAPPFGFPVPSINNQLGLNPPAISQERNLAIVITGAGFQNQLRMSQRSENQSNLNTGPPSTNEARNNPLTQGNRQPVPGLSEEDIMAHLRLEEFHCTEATPEDVESCCICQENYADGEDIGVLDCGHKLHFDCAKKWLRTKNTCPICVRTGLASQKAAREDVGLKMKSPSVLICSSPLDLHRRQGNNIQGGRSPNQIISNHKSVEEESSANSEEEEKHPQRKATRKYSTTRMGDMYRYDNTENHNFPASSTSYLSSSSPQDEISLFLRQILLRSSSSSASSSLPVTHPAKNAHTSVAGLCSSHATLENNAHLSHRSSLFQDGISVFDSSIGVSAPNDVFLSSSGTHTLANMKDSSAVNLPSSSFGVSENEFDEYDCESEEGVEALVEQQPVKSVPPRSSSKRSRAAEVHNLSEKILAPLSLNESSPLSFHPASIRCETTGCSNMLSMRNGLSLPPMCFSEDLQSQQFYQMRSEPGEENRSLPLNMATTLPLTQDNLLQYESKSNLPDKLNTQDEPLVPSPSYTINPETSVGLESPILPHIRSFPQKRTSEARSNEILRRQPLNASHSDTNPLGGSQVSHAFDMQTPEQKDRVFETGIAGKDQLGIDPKK 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0295 988 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 27 530 IPR045191 GO:0061630
Lele50g0295 988 MobiDBLite consensus disorder prediction 562 610 - -
Lele50g0295 988 MobiDBLite consensus disorder prediction 937 988 - -
Lele50g0295 988 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 530 IPR013083 -
Lele50g0295 988 Pfam Ring finger domain 485 526 IPR001841 -
Lele50g0295 988 CDD RING-H2_TTC3 485 526 - -
Lele50g0295 988 MobiDBLite consensus disorder prediction 23 50 - -
Lele50g0295 988 MobiDBLite consensus disorder prediction 883 909 - -
Lele50g0295 988 MobiDBLite consensus disorder prediction 423 456 - -
Lele50g0295 988 ProSiteProfiles Zinc finger RING-type profile. 486 526 IPR001841 -
Lele50g0295 988 MobiDBLite consensus disorder prediction 562 584 - -
Lele50g0295 988 SMART ring_2 486 526 IPR001841 -
Lele50g0295 988 MobiDBLite consensus disorder prediction 763 785 - -
Lele50g0295 988 MobiDBLite consensus disorder prediction 937 962 - -
Lele50g0295 988 MobiDBLite consensus disorder prediction 138 162 - -
Lele50g0295 988 MobiDBLite consensus disorder prediction 585 602 - -
Lele50g0295 988 SUPERFAMILY RING/U-box 485 528 - -
Lele50g0295 988 MobiDBLite consensus disorder prediction 423 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0295 Lele-ChrLele50 1719608 1729525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0295 458 533 C3H Transcription Factor Family AT2G15530 41.463 8.63e-17 83.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0295 50 1719608 1729525 Lele53g0135 53 1063536 1065588 CCT
Lele50g0295 50 1719608 1729525 Lele55g1357 55 19974111 19976189 CCT
Lele50g0295 50 1719608 1729525 Lele50g0295 50 1719608 1729525 ECH
Lele50g0295 50 1719608 1729525 Lele51g0295 51 1673570 1675975 hybridization
Lele50g0295 50 1719608 1729525 Lele52g0303 52 1788860 1794112 hybridization