Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0287 ATGTCTCTCTTGGACGTGGACATGCACAAAACTTCAGAGTATGAAAGCAGCGGCATGGACATGATTTCGATGATGATGCAAATGGAGAAGTTCCCAGATGATCCGTTCTTTGATCCTTTCTTTAACAATACCTCTGATTACCCTGAAGCTGACGAGTCTGGTAATAGTATTGCTGCCACTACTCTCCCTGCATCCCTCAACTCTAACGATCCTCCTGATTATGTCAACCTTAGTCCAATTATTCAACAACCCATGGCACCACCATCGTTTCTTCAACCTCAATCTGACCATGTTCCTGCGACGAGGCTCAGGAATAAGTATAATCCCAATACATCGCGTGCTTTCCCCTGCGCTTCGGACAAGAGGAATTCAATGGCGGCCATGAGAGAGATGATATTCAGGATAGCGGTGATGCAACCGATTCAGATAGACCCAGAATCAGTGAAGCCGCCGAAGCGGAGGAATGTGAAGATTTCGAAGGATCCTCAGAGCGTGGCGGCGAGGCAAAGGAGGGAAAGGATAAGCGAGAGAATCAGAATTCTGCAGAGATTAGTTCCGGGTGGAACGAAAATGGACACGGCTTCCATGTTAGACGAAGCGATACATTACGTCAAGTTCTTAAAGAAACAAGTGCAGACTCTGGAACAAGCAGGGGCTAGTAGGCCCGTAGGTGTTCCTTTTTCTGGGGCCTCAAGTAGTTCTTCTGTCAATGTCAATTATTCTGATTTCATCAAGGCACGCCAACCAGCTCCTCGAATGGTGGGTTCTAGGCAAATGCTAAGTTGA 786 0.4707 MSLLDVDMHKTSEYESSGMDMISMMMQMEKFPDDPFFDPFFNNTSDYPEADESGNSIAATTLPASLNSNDPPDYVNLSPIIQQPMAPPSFLQPQSDHVPATRLRNKYNPNTSRAFPCASDKRNSMAAMREMIFRIAVMQPIQIDPESVKPPKRRNVKISKDPQSVAARQRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRPVGVPFSGASSSSSVNVNYSDFIKARQPAPRMVGSRQMLS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0287 261 Coils Coil 197 217 - -
Lele50g0287 261 FunFam BHLH transcription factor 161 223 - -
Lele50g0287 261 Pfam Helix-loop-helix DNA-binding domain 167 207 IPR011598 GO:0046983
Lele50g0287 261 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 17 239 IPR045843 GO:0003700|GO:0006355
Lele50g0287 261 SMART finulus 164 213 IPR011598 GO:0046983
Lele50g0287 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 217 IPR036638 GO:0046983
Lele50g0287 261 Gene3D - 157 221 IPR036638 GO:0046983
Lele50g0287 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0287 Lele-ChrLele50 1687955 1688740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0287 88 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 66.667 1.55e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele50g0287 HLH 4.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0287 50 1687955 1688740 Lele50g0287 50 1687955 1688740 ECH
Lele50g0287 50 1687955 1688740 Lele51g0290 51 1632796 1633575 hybridization
Lele50g0287 50 1687955 1688740 Lele52g0296 52 1757686 1758471 hybridization