Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0278 ATGTCTTCGCAAAGATCGGTGCCGGCGCCGTTTCTGACCAAGACATACCAGTTGGTGGATGATCCGGCCACTGACGACGTCATATCGTGGGGTGAAAGTGGGAACACGTTCGTGGTGTGGAAGCATGCGGATTTTGCCAAGGATTTGCTTCCCAACTATTTCAAGCACAACAACTTCTCAAGCTTCGTACGCCAGCTCAACACCTATGGATTCCGGAAGATCGTTCCTGACAAATGGGAATTCGCGAACGAATATTTCAAACGAGGACAGAAGGAGCTGTTGGCGGAGATCAAGCGTCGGAAACCCGCGGTGCAATCGGCGGCGCAGGCCCCTGCGGCGTCGAACTCCGGCGGGGATGACATGGGATCGACCTCCACATCGTCTCCAGATTCGAAGAATCTGGGAACCGTGGAGACGACGAATTTATCGGGGGAGAACGAGAAATTGAGGAAGGATAACGAGATGCTGAGCTGGGAGCTGGCGCAGGCGAAGAAGCAGTGCCAGGAGCTGATCAGTTTCCTGAAGGAGCACGTGAAGATGGGGCCGGATCAGATCCAACGGATCATGCGGCAAGGAAGTAGCGGGTCCAGCCGCAAACAGGAAGGCGATGATGACGACGAAAACGCGGTAGGTGAAGGGGAGGGGTCTGGTGGAGGAAGCTTGAAGCTGTTTGGGGTCAGGTTGAACACAAGCCATGGCACCGCCTCCAACACCAACTCCAAGAGAGGGCGCGAAGACCAAATAGGGTGCGGGGGCCCTCACTCTAATAAGCAACTGAAAACTGTTGACTTTGTTTCACCCGTGATGATGAAGAGCAGCAAGGTCTGCAAATGA 834 0.5456 MSSQRSVPAPFLTKTYQLVDDPATDDVISWGESGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLAEIKRRKPAVQSAAQAPAASNSGGDDMGSTSTSSPDSKNLGTVETTNLSGENEKLRKDNEMLSWELAQAKKQCQELISFLKEHVKMGPDQIQRIMRQGSSGSSRKQEGDDDDENAVGEGEGSGGGSLKLFGVRLNTSHGTASNTNSKRGREDQIGCGGPHSNKQLKTVDFVSPVMMKSSKVCK 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0278 277 ProSitePatterns HSF-type DNA-binding domain signature. 50 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g0278 277 FunFam Heat stress transcription factor B-4 3 101 - -
Lele50g0278 277 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 206 IPR027725 -
Lele50g0278 277 Coils Coil 146 166 - -
Lele50g0278 277 SMART hsfneu3 7 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g0278 277 SUPERFAMILY "Winged helix" DNA-binding domain 8 100 IPR036390 -
Lele50g0278 277 MobiDBLite consensus disorder prediction 102 150 - -
Lele50g0278 277 PRINTS Heat shock factor (HSF) domain signature 11 34 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g0278 277 PRINTS Heat shock factor (HSF) domain signature 49 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g0278 277 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g0278 277 MobiDBLite consensus disorder prediction 190 258 - -
Lele50g0278 277 MobiDBLite consensus disorder prediction 108 143 - -
Lele50g0278 277 MobiDBLite consensus disorder prediction 227 244 - -
Lele50g0278 277 Pfam HSF-type DNA-binding 11 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g0278 277 Gene3D - 3 101 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0278 Lele-ChrLele50 1634019 1635830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0278 2 276 HSF AT4G36990 51.399 1.89e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele50g0278 HSF_DNA-bind 3.7e-33 CL0123