Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0261 ATGGACTTGAGCTTGGATTTGAGTTTGTCTTTTGTTCCCAGAACCATTTCTGCGTTTCTTAGTGAGGTCTCTAAAACCGGAGATAGGCACGAGAAATTAGCGATGCTTGACGACTTTGTCAAGAGATTGGAGGATGAAATGAGTAAGATCGAAGCCTTCAAACGCGAGCTTCCCCTCTGCATGTTGCTCGTAAACGATGCTATAACGAGGTTGAAGGAGGAGAAAGTACGGTTCGTGGAAGTGCTAGATCGACCTGAGATTGAAGAATTCATACCATTGAAAGCCAATTCTGGAGAAAACCGACCATTAGCTATGGAAAAGGAAAGCTGTAACAAGAAGAACTGGATGACCTCTGCTCAACTGTGGAGCGCTGAAACCAAATTGGGAAGTGAAAATGATCGGTCTGTGCCGGAGAACCTAATTCAGTCACGAAATCTGAAAAACAGAGGAGGGGCATTTATCCCCTTCAATGGAAATTTGGGTATGTCAAAGCCAGTGACGAAGGAAGATAACGAACTCTCACAAGTTCCTAGTCTTAGCTTGATGACTCCAGCGTCTGAACTGAATCTCAAGAATTCAAAAACTTGTAGCAGAAATTGTTCCGGTGCTTCCTTCCTTACAAGCCGGCTTGACGGACAAGTCCAACCACAACCTCAACATTTGCATCAAAATCCTAGAAAACAAAGGCGATGCTGGTCTCCGGAGCTTCACCGACGATTTGTTGATGCGCTTCAACAACTGGGAGGAGCTCAAGTGGCCACCCCAAAACAGATTAGAGAATTAATGCAGGTGGAAGGCCTAACAAATGATGAAGTGAAAAGCCATTTGCAAAAATACAGGCTTCATGTGAGAAGACTTCCATCTTCAACAATTAACCAAGGAAATGGCTTGTGGATGGTAGAAGATCAATGTGGAGAAAAGTCAAAAGTAAACTTATCGCAGTCTGGTTCTCCCCAAGGACCTCTCTTACTTGCAGGTTCTGCAAAGGGTCTATCGAGTTCTGGAGATGGCGAAGAAGATGAGAAATCAGATTGCCATAGTTGGAAAGGTGGCCTGCACCAGCAAGCAGAAGCTGATAATGTACTTATTGAATATTGTGCAAATGTTGGCACTAGGGATCCACCTGCAAAAGAACTTTTTCAGTTATGGTCAACAGGGACCTCTTTAATTAATCCCCCAAGGCTGACAAACCGGAGGTCGCCGGTGAAGTTGGCGTATAGGGGGTCTGACTTCATCCCGAGCAAGGCTGCATCTTTGCCGCCAAAAACCGTGAAGTATGCGGATGTGTTGCTGGGGCATGCTGGGGATCCCCATGGCGATCCAGTCTTCAATAATCACGATCTTAACATGGATGTGCTTTACCAAGCTGGTGAAACTCAACAGGGCATCCTTATGTATACTCCTCGCTTAGTTTCAATAAACATGAAAGGATCCCTTGGATCTATGAGTTCACGTGGTACATTGTATAATGATGATGCGCCTATAGCATCAGATGTTGTCACTTGGGATTTCTTTGCTCGGCAGGGGGAAGAAATCAGTGACAGGCTTCATTTTTTGTTGAAGAGTGTGACCATATGCAGGTCCTTTCCATGTGGGATTCAGTTCATTGTTGATGATTCAGGAGGTTTCTCTGCTGTTGCTGTGGAGTTTCTAGAGAACCTTGTAGATGACTATACTAACACTCCTGTAATGCTATATGCTACCCGAAGTCCAGGTTCAAGCACAAGGCTTCGGAGCAGGAAGCATACAATCTCAGGGGATCTTCATGATGCTATATCATTTTCAAGATTGTCATCCTACTCTAAACTTATTGTGCCAGTTGGTCTGCCCATCTTAAGTACCACCGGTCATCGGGCATCAGTTTCTGAAGTAAAAGATATGATTCACGCTGCTTTTGAACGTTCCAATAAGAGGCCAATGTTCTGTCGTCTATCTGCTGCTCTTTGTCCCCTCCCTATCCCCTTGCCTTTTCCATCTATATTTGGGAACCTTGTTGGCCAGTGTGGTGAACTGATTAGTGGTCAGGTGACTGATGCATCAAGGAAAGATTGCAGAACCTACGCCGGTTTGGAATCGAACGAGGAGCACTTGGAGCGCAGTTACTTAGCAGCTGGGGCTTTGGAAAGGAAGAATTGGTGGAAATGGAAGAGATTTTGTCTAAAATGATCCCAAGCTTTGCTCAAACCCTTTAGCAATTCCCATTTTTCAGCCTCCCTAGCAAAAGACGGCCCCAGTTCCAGGATAAAGGCCCTGATCCAATCCACAACCTCCATGGCCATCTTCCTTGACAAGACCTATCAGATGCCACAGAAGAAGACAAAACCTGTTGAGCCCGGCCTTTCGAAAAGTCTTCTACGGGACCAAAAAACGAATGAGAGCAAATCTGATAGCCCAGGCCAAGGTCTTGGATTTGACATGCTGCCGAATGCCAATTATATAAGCACGCCTACAGTTATAACTCGTTTTTTCCTCAATAATTCAGAGTTCACAGCATAA 2496 0.4503 MDLSLDLSLSFVPRTISAFLSEVSKTGDRHEKLAMLDDFVKRLEDEMSKIEAFKRELPLCMLLVNDAITRLKEEKVRFVEVLDRPEIEEFIPLKANSGENRPLAMEKESCNKKNWMTSAQLWSAETKLGSENDRSVPENLIQSRNLKNRGGAFIPFNGNLGMSKPVTKEDNELSQVPSLSLMTPASELNLKNSKTCSRNCSGASFLTSRLDGQVQPQPQHLHQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRLPSSTINQGNGLWMVEDQCGEKSKVNLSQSGSPQGPLLLAGSAKGLSSSGDGEEDEKSDCHSWKGGLHQQAEADNVLIEYCANVGTRDPPAKELFQLWSTGTSLINPPRLTNRRSPVKLAYRGSDFIPSKAASLPPKTVKYADVLLGHAGDPHGDPVFNNHDLNMDVLYQAGETQQGILMYTPRLVSINMKGSLGSMSSRGTLYNDDAPIASDVVTWDFFARQGEEISDRLHFLLKSVTICRSFPCGIQFIVDDSGGFSAVAVEFLENLVDDYTNTPVMLYATRSPGSSTRLRSRKHTISGDLHDAISFSRLSSYSKLIVPVGLPILSTTGHRASVSEVKDMIHAAFERSNKRPMFCRLSAALCPLPIPLPFPSIFGNLVGQCGELISGQVTDASRKDCRTYAGLESNEEHLERSYLAAGALERKNWWKWKRFCLKXSQALLKPFSNSHFSASLAKDGPSSRIKALIQSTTSMAIFLDKTYQMPQKKTKPVEPGLSKSLLRDQKTNESKSDSPGQGLGFDMLPNANYISTPTVITRFFLNNSEFTA 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0261 831 MobiDBLite consensus disorder prediction 334 348 - -
Lele50g0261 831 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 227 282 IPR006447 GO:0003677
Lele50g0261 831 Gene3D - 226 283 - -
Lele50g0261 831 SUPERFAMILY Tubulin nucleotide-binding domain-like 431 610 IPR036525 -
Lele50g0261 831 Pfam Misato Segment II tubulin-like domain 446 503 IPR019605 -
Lele50g0261 831 Pfam Myb-like DNA-binding domain 229 280 IPR001005 -
Lele50g0261 831 MobiDBLite consensus disorder prediction 309 351 - -
Lele50g0261 831 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 284 IPR017930 -
Lele50g0261 831 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 349 IPR044787 GO:0003700|GO:0006355
Lele50g0261 831 Coils Coil 36 56 - -
Lele50g0261 831 MobiDBLite consensus disorder prediction 771 802 - -
Lele50g0261 831 SUPERFAMILY Homeodomain-like 225 285 IPR009057 -
Lele50g0261 831 FunFam Myb family transcription factor 226 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0261 Lele-ChrLele50 1515896 1529110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0261 1 277 G2-like Transcription Factor Family AT4G37180 42.403 6.22e-59 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele50g0261 Misat_Tub_SegII 2.3e-10 CL0566
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0110 54 881742 889281 Lele50g0261 50 1515896 1529110 CCT
Lele55g1377 55 20207165 20208892 Lele50g0261 50 1515896 1529110 CCT
Lele56g1322 56 16492798 16503171 Lele50g0261 50 1515896 1529110 CCT
Lele50g0261 50 1515896 1529110 Lele51g0258 51 1465097 1470995 hybridization
Lele50g0261 50 1515896 1529110 Lele52g0266 52 1549683 1551274 hybridization