Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0256 ATGCAGAGCATGGACGTGATAATGCAGATAATTTCAGAAGCTACTATAACACCAGTTGGGACCTGTTCTTTGGATCAGTTTATGGCAGACTTTGACGGAGACGATGGCACGGATGAGTCAATTTTAGGTGCTAGTAGAAAAGTCAAAGAGTGTTCAATAAAAAGATTCCTTTCGTTAAACTTCTCCTTTCATTTCAAGCCTTTTTCCCTTGAATTCCAACGCAATTCACCCTATGGTAGTAACAGATCAATTCTCTCTTCTCTGCTCAGCTTGAAATTGAGGGAGTTAAATTCTCTGGGTGTGGAACCGTTCGCGCAATCAGCAATCCTTTGCGAGCTATTTGTGCTGTTAAATAATAGAACGAGGAAAGTTCCTGCATCTTACAGCTGGCTTATCCAAATTGAAGAGTGTAAAATTTGGGACCCCATTTTCCCAGAAGCATCTTCCTTACTCAGAGATAAAGAGTTGTTCAAAGAGGACAGTCAGCAACTGAGCGAAATTGTGACCGGGGAGAATTCAAGAAATTTGCTGAGTGCTATGGCAGGTGCGGTGATAGGAGAAGCTATTGGGGGAGCTCTACTTGAGGAAGGGCTGAGAAGCGGGTTGGAGTTGGTGGACAAGGCTATCAACTTCCGAACGAAACGTGAGGATCTCCGAGACACCATTCAGCGTTTGACTCCGCTGATCCAGAAGATGAAGGCATATGACAAGACATCGGATCGCCCTCTGGATCAAATTGAACGAGTTTTGAAGGAATTTCAAGAGTCAGATAAGCTTGTCCGCAAATACTCCAACGTCCGTTGGTGGAAATCTCTGTCTCTTCCTTTTTATCATGATAAGCTTCAGGAAGGGAACAAAAAACTTGAGAGGGCCATCACTGTCGATATGCAAGTTTACATGGCGAGAGACGTGAAGGAGATTTTGTATAGCTTGTCGACCCTGAAAGAAATTATGTTGACTCTTGTTACTAATTATTCTGGGCTCACAAGTAGCGGCGCAGTCATCAAGGGCCTGTACGGTGCTCCTGAGAAACCAGAGTATACTGTGGGATTGGATAGGGCCTTGAAGAGGACTAAGAATGAGCTGCTCAACGGGGATAAACCTGTTCTTGTATTGACTGGTTTGCCAGGATCGGGCAAGACAACCATGGCTAAAGAACTTTGCTGGGATCCCGACGTTAAAGACAGGTTCGAGGAAAACATCTTCTTTGTGATCTTTTCGAAAACGCCCGACTTGAAGAATATTGTGCAGACAATATTTAGACACTGTGATCGCCCAGCGCCGGAGTTTTTGAGTGATGAAGATGCAATTAATCGATTGAGTGTTTTGCTAAGGCAATTCGGGGGAAGGCCGATATTGTTGCTCCTGGATGATGTTTGGCAGGGCTCAGAAACTCTTGTTGAGAAATTTAAATTCCAGATTTCCAATTATAAAGTTTTGGTCACTTCAAGAGTTACATTCCCTAGATTTGTCACTTCATGCCACTTGGAACCACTTGGTGATGATGATGCAATAAGGCTTTTTCATCACTTTTCTCTAATAGATGACAGCGGCTCATACAAACCCGATAAAAAACTTGTCCACGAGGTAGTAAGAGGTTGCAAGGGTTCGCCATTGGCAATTGAAGTTATTGGTGGATTGCTCTGTAAGCAGCCCTTTGAGGTGTGGGAAAAGATGAAGGACCTTTTGCTAAGCCAGTCTATATTTGATTCTAATACCGACTTGCTCCATCGCCTTCAAACTAGCTTAGAAGTAATGGGAGATAAGTTCCCCATCAAGAAGGAGTGCTTTATGGAGTGCTTCATGGACCTAGGCTTATTTCCTGAAGACAAAATGATCCCTGTTGATACCCTCATTGACATGTGGGCGGAACAGTATAATCTAGATGAAGGTGGCATGGACGCAATGGCCATTATCCATGAATTAACTAAGAGCAATTTGGCCAAGACTGTCGTTAGAAGGAAAATAGCAAGGGACACAGACAAGTACTACAATAATCACTTTGTCATGCTACATGATCTTCTGAGAGAACTAGCCATTCATCAAAGCAGCCTGGAGCCATTTGAAGAGAGGAGAAGGTTAATTATTGATTTGGGTGAAAATAATCGTCCCAAATGGTGGCCAGAGCAGAAGCAGCAAGGGCTCATTGCCCGCATCTCCTCATTATTATTTAGATGGTGGATGGAACAGAAGCAGCAGCAAGTTATTGCCCACTCATTATCTATATACGCAGATGACACGTCTACTGCAGAATGGTACAACGTGGAACCTGTTGAAGCAAAGGTTTTGATTTTGAATCTTCAAAGTAGCAATTACACGATACCAAATTTTGTGAAGAACATGAGAGAACTCAAGGTTATCGTAGTCACAAATTATGGTTTCCATATTTCCAAATTAAACAAATTTGAGCTGCTTGGTTCTTTATCTCACCTGAAAAGAATTAGATTGGAGAAGATTTCAGTACCTTGCCTGTGCAAATTGAAGAATCTCCAAAAACTATCCCTTCATATGTGTAGTACAAGGCTGGCTTTTGAAAGTTCCCCATTCGACATTTCAGTTGCGCTGCCAAATCTAGTGGAGTTGAATATTGATTACTGTAAAGATCTGGTGGCATTGCCCGTTGAGATTTGCAAAATTAACCCCTTGAAGAAGCTTTGTATCACTAATTGTCACAAGTTTTCTGAACTGCCTCAAGAAATAGAAAATCTGAAGAATTTGGAAGTACTAAGGATTAGTTCCTGCTCTAATTTGGAAGAGATACCAGACTCCATCAAAAGTCTCCAGAAGCTAAGCCATGTTGACATCTCAGACTGCATAAGCCTTAAGCAACTACCAGAGGACTTTGGGCACTTGTGCAATCTGGAAAAGCTCTACATGAGGGGTTGCTCAAGATGTGAATTGCCAGTCTCTGTCGTGAATCTCAAGCGTTTAACGATTGTAATATGTGATGAAGAGACCGCTGCATCCTGGGAACCTTTCCAGCCTCACCTTCCCAATCTAACTATAGAGCAGCTCAAAGCAGATGTTAACTTAGATTGGCTTCAAGGAGTTTAA 3054 0.4247 MQSMDVIMQIISEATITPVGTCSLDQFMADFDGDDGTDESILGASRKVKECSIKRFLSLNFSFHFKPFSLEFQRNSPYGSNRSILSSLLSLKLRELNSLGVEPFAQSAILCELFVLLNNRTRKVPASYSWLIQIEECKIWDPIFPEASSLLRDKELFKEDSQQLSEIVTGENSRNLLSAMAGAVIGEAIGGALLEEGLRSGLELVDKAINFRTKREDLRDTIQRLTPLIQKMKAYDKTSDRPLDQIERVLKEFQESDKLVRKYSNVRWWKSLSLPFYHDKLQEGNKKLERAITVDMQVYMARDVKEILYSLSTLKEIMLTLVTNYSGLTSSGAVIKGLYGAPEKPEYTVGLDRALKRTKNELLNGDKPVLVLTGLPGSGKTTMAKELCWDPDVKDRFEENIFFVIFSKTPDLKNIVQTIFRHCDRPAPEFLSDEDAINRLSVLLRQFGGRPILLLLDDVWQGSETLVEKFKFQISNYKVLVTSRVTFPRFVTSCHLEPLGDDDAIRLFHHFSLIDDSGSYKPDKKLVHEVVRGCKGSPLAIEVIGGLLCKQPFEVWEKMKDLLLSQSIFDSNTDLLHRLQTSLEVMGDKFPIKKECFMECFMDLGLFPEDKMIPVDTLIDMWAEQYNLDEGGMDAMAIIHELTKSNLAKTVVRRKIARDTDKYYNNHFVMLHDLLRELAIHQSSLEPFEERRRLIIDLGENNRPKWWPEQKQQGLIARISSLLFRWWMEQKQQQVIAHSLSIYADDTSTAEWYNVEPVEAKVLILNLQSSNYTIPNFVKNMRELKVIVVTNYGFHISKLNKFELLGSLSHLKRIRLEKISVPCLCKLKNLQKLSLHMCSTRLAFESSPFDISVALPNLVELNIDYCKDLVALPVEICKINPLKKLCITNCHKFSELPQEIENLKNLEVLRISSCSNLEEIPDSIKSLQKLSHVDISDCISLKQLPEDFGHLCNLEKLYMRGCSRCELPVSVVNLKRLTIVICDEETAASWEPFQPHLPNLTIEQLKADVNLDWLQGV 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0256 1017 Gene3D - 337 488 IPR027417 -
Lele50g0256 1017 PRINTS Disease resistance protein signature 446 460 - -
Lele50g0256 1017 PRINTS Disease resistance protein signature 901 917 - -
Lele50g0256 1017 PRINTS Disease resistance protein signature 369 384 - -
Lele50g0256 1017 PRINTS Disease resistance protein signature 534 548 - -
Lele50g0256 1017 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 180 1014 IPR039203 GO:0050832
Lele50g0256 1017 CDD AAA 349 513 - -
Lele50g0256 1017 Gene3D - 593 682 IPR036388 -
Lele50g0256 1017 Gene3D Ribonuclease Inhibitor 725 995 IPR032675 -
Lele50g0256 1017 Pfam NB-ARC domain 355 572 IPR002182 GO:0043531
Lele50g0256 1017 Pfam Leucine Rich Repeat 905 927 IPR001611 GO:0005515
Lele50g0256 1017 Gene3D - 499 582 IPR042197 -
Lele50g0256 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 598 IPR027417 -
Lele50g0256 1017 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 187 314 IPR008808 -
Lele50g0256 1017 SUPERFAMILY RNI-like 768 993 - -
Lele50g0256 1017 ProSiteProfiles RPW8 domain profile. 179 330 IPR008808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0256 Lele-ChrLele50 1487317 1492315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0256 855 1001 Receptor kinase-like Gene Family AT3G11080 28.378 9.45e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0256 50 1487317 1492315 Lele51g0254 51 1433457 1442751 hybridization
Lele50g0256 50 1487317 1492315 Lele52g0262 52 1527798 1529258 hybridization