Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0249 ATGATCCAGGAACTATTGAGCGGTGCTGGTCTCATTGCAGGCGAAAGGAAAATCTCCACTAACGGAGCAGCCGCAGTTTTCCCGCTTATCACTACATCTCATACTTCTGTTCCTTCTTCATCATCTCACCCTTCAACCCCCATCACTACTTCTACCACCGCCACAACCACCGCTGCAGCTGCAGCCGCCGCCACATCTACAAATTCCGAGAACCAAAATCTGAGGTGCCCGAGGTGCGATTCTTCCAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGGTACTGGACCAAAGGTGGTGCTCTCAGGAATGTTCCAATCGGTGGTGGTTGCCGGAAGAACAGGAACGTAGGCGCCTCAAACTCCGTTGTGAAGACGAGCGTGGCTAAGATGAAAACAGCTGCACCATCGGAGCTCGAAAGGTCGGTGCTCGGGGTGGCAGGGTTCATCGACCACGACCTTTCTTCAAACCCGATTCTGTGGGGCTCGCCACAAAATTCTCCCGTGTTAGCTCTACTGAGATCTGGTCATCAAAACCATAACCCTAACCCTAGTCTTCCCACGTCCGTCAATGCTGTTAAGGAAGAAGGGAACTTGATGGTGTCCCACACGGTGACTGAGCCAGTGGTTGGAAATGGGTTGGTTAATGGTCGAGCACTAAACTTTGATTCTGTTGGTCAATTTCCCACACTTGGGCTCTGCAGCTCTATCTGGAGAAGCAGTAATAGTAATAATAACAATAATCAAGATGGGTTCTTAGTTGGAGAACATGAGGGCAGTGGAATTCAAGAACTGTACCAGAGGCTGAGATCATCATCATCATCGGCTAATTATTGCAGCGACAATAACTCGTCACAGGTGTTGGGGAACATGGCTTCTTCTTCACACGCAACTTCGCCTTTATCGGCTAATTTGGGGTCAGTTCCAGTAGTCTCAGGGGATGATCAATTGGGGTACACCTGGAATCCAACTCTTTCGTGGTTTGATCTTTCCACCACCAATGCTAGGCTTTCATCGGTATTCTGTGTTGCCTATTATGGAAATCTCACTCTGGTTAATAAGATACGTAATCAGTATTCGAAGGATATTGTGATGGCTGAGAAAATTCTAATGGCCCGCGGGTCGGGGTCTGTGCTTTCTTCTAGTCTGTATTTTGAAACCATTTTGCAAACCTTGAGGAATCCTATCATCAGTTTCTAA 1236 0.4798 MIQELLSGAGLIAGERKISTNGAAAVFPLITTSHTSVPSSSSHPSTPITTSTTATTTAAAAAAATSTNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNRNVGASNSVVKTSVAKMKTAAPSELERSVLGVAGFIDHDLSSNPILWGSPQNSPVLALLRSGHQNHNPNPSLPTSVNAVKEEGNLMVSHTVTEPVVGNGLVNGRALNFDSVGQFPTLGLCSSIWRSSNSNNNNNQDGFLVGEHEGSGIQELYQRLRSSSSSANYCSDNNSSQVLGNMASSSHATSPLSANLGSVPVVSGDDQLGYTWNPTLSWFDLSTTNARLSSVFCVAYYGNLTLVNKIRNQYSKDIVMAEKILMARGSGSVLSSSLYFETILQTLRNPIISF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0249 411 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 63 275 IPR045174 GO:0003700|GO:0006355
Lele50g0249 411 Pfam Dof domain, zinc finger 72 128 IPR003851 GO:0003677|GO:0006355
Lele50g0249 411 MobiDBLite consensus disorder prediction 34 53 - -
Lele50g0249 411 ProSitePatterns Zinc finger Dof-type signature. 76 112 IPR003851 GO:0003677|GO:0006355
Lele50g0249 411 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0249 Lele-ChrLele50 1467182 1469368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0249 32 138 C2C2-Dof Transcription Factor Family AT5G65590 55.140 2.46e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele50g0249 zf-Dof 1.2e-31 No_clan