Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0230 ATGGCTTGCAGAATTCGTCATGGGTACGCACATGTGGCCAACAATCTGTACCAAGGATGGGTGCAATATGCCATTGGTGGAAGCATGGGGCCCAGCCTCAAAAGTGAAGCCAACCTCTTCATAGCACCAGCATCTGGAAGCAAAGAGGTGACATGGAGAAAAGAGAGCAATGGGAACGTGGGACAGTGGGAATTCCATTCGGCGCCTTACGTTGCACCAAAACCTCCAGATGTTGATTCCAATATACCATACCAGCAACCATAATTCCTTGGATCCTCATTCTTGGACCCAAAGGGAAGGGGTGCTTCGACTGGTTATGATAATGCGGCCGCATTGCCTGCCCGTGGCAGAGGAGAGGAGACGAGACGAGGAGGAACTTGCAAAGGAAAACAATTAGCAGTCGTTGTTCGCTATTGTCGACAGTTAATAGTGGGGGGTGGAATAGGCTGA 450 0.5022 MACRIRHGYAHVANNLYQGWVQYAIGGSMGPSLKSEANLFIAPASGSKEVTWRKESNGNVGQWEFHSAPYVAPKPPDVDSNIPYQQPXFLGSSFLDPKGRGASTGYDNAAALPARGRGEETRRGGTCKGKQLAVVVRYCRQLIVGGGIG 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0230 149 PRINTS Pollen allergen Amb family signature 23 42 IPR018082 -
Lele50g0230 149 PRINTS Pollen allergen Amb family signature 1 20 IPR018082 -
Lele50g0230 149 Pfam Manganese-stabilising protein / photosystem II polypeptide 83 123 IPR002628 GO:0009654|GO:0010207|GO:0010242|GO:0042549
Lele50g0230 149 FunFam Oxygen-evolving enhancer protein 1, chloroplastic 91 125 - -
Lele50g0230 149 Gene3D - 2 82 IPR012334 -
Lele50g0230 149 Gene3D photosynthetic oxygen evolving center domain 91 125 - -
Lele50g0230 149 SUPERFAMILY Pectin lyase-like 4 75 IPR011050 -
Lele50g0230 149 PANTHER PECTATE LYASE 18-RELATED 2 68 IPR045032 GO:0030570
Lele50g0230 149 SUPERFAMILY OMPA-like 76 122 IPR011250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0230 Lele-ChrLele50 1366469 1367637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0230 4 50 Polysaccharide Lyase AT5G09280 78.723 6.57e-21 84.3