Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0218 ATGGAGATTAAGGAAAGTATATGGAGAGGAGGAAAGAAGCGTCAACACACCAATTGCCGCTGCCAAAAGTTGAAATCTATCAGCAAATCACAAAGATCACGGGAGAAGAGGCGAGATTGGCCAGGAGCCAAAAATCTCTGTGCCGGAAGTTGCGAAGAAGTAGCGGGGAGCTCCTCTGTCTCGGTAGTACATTCTACCTCCCTTCATTTTCTCTGTCTCCATACCATCCGAAGTGATTTTTCTCACTCGTACGGTTCTGGCAGCATGGACCTGGCGGAGCTAACTGTAGAACAAGTTTTGAGGAGGGATATCCCATGGGAGACGTACATGAGCACTAAGTTGATCTCAGGCACAAGCCTTCAGCTCTTAAGGCGTTATGATCACAAATCACAAAGTCAAAGAGCACAGTTGTTGGATGATGATGGTCCAGCTTATGTACGTGTGTTTGTTCATGTTTTGCGTGATATACATAAAGATGAGACAGTGGAATATGTTCTGGCCTTAATAGATGAAATGCTTACAGCAAATCCAAAAAGAGCAAGGCTGTTTCACGATAAGTCCCTTGCAGATGATGATGCCTATGAACCTTTCTTAAATTGCTTTGGAAGGGAAATTGGTTCATACAAGAGAAAAGTTGCCAGTTGTGTTGCAAATGGAGAGGCATCAAAATCAAAAAAGCCATTTATTACTATCGATGATGTTTTAAAAGAATTGGTGAAATGGCTCTGTGAACAGCTGAGGAATCCTGCTCATCCTAGTCGTGGTGTGCCAACTGCTATCAACTGTTTATCAACTCTTCTTAAGGAACCTATGGTTAGATCTTCCTTTGTTCAGGCAGGTGGAGTCAAATTGCTTTTACCTTTGATTTCTCCAGCATCCACCCAACAGTCTATTCAGCTCCTATATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATCTGGCTACTTCAAGAACCCTTCCCCGACTTATTGATGTTGTTAAGAGTTCTACTAAAGAGAAGGTGGTTAGAGTAGTAATCTTAACTCTCAAGAACTTGCTGTCAAAAGGGACATTGGGTGCTCAAATGGTTGACCTCCAGTTGCCACAAGTTGTTCAGAGTTTGAAAGCACAGACATGGAGTGATGAGGACTTGTTGGAGGCGCTGAATTACCTGGAAGAAGGGCTTAAGGATAACATTAAGAAACTTAGTTCTTATGACAAATATAAGCAAGAAGTTCTCCTTGGCAACCTGGATTGGTCTCCCATGCACAAAGATCCTATATTTTGGCGAGAAAATATTACTAACTTTGAAGAAAATGACTTTCAGATTTTAAGAGTCCTACTAACAATTTTAGACACGTCCGGTGATCCAAGAAGTCTGGCTGTTGCATGTTTTGACCTCTCACAATTCGTCCAACATCATCCTGCCGGGAGAATCATAGTGACAGACCTTAAAGCCAAGGAACGGGTAATGAGACTAATGAATCATGAGAACGCTGAGGTCACTAAAAATGCACTGCTCTGCATCCAAAGGCTCTTCTTAGGTGCGAAGTATGCAAGCTTTTTGCAGGCTTAG 1578 0.4233 MEIKESIWRGGKKRQHTNCRCQKLKSISKSQRSREKRRDWPGAKNLCAGSCEEVAGSSSVSVVHSTSLHFLCLHTIRSDFSHSYGSGSMDLAELTVEQVLRRDIPWETYMSTKLISGTSLQLLRRYDHKSQSQRAQLLDDDGPAYVRVFVHVLRDIHKDETVEYVLALIDEMLTANPKRARLFHDKSLADDDAYEPFLNCFGREIGSYKRKVASCVANGEASKSKKPFITIDDVLKELVKWLCEQLRNPAHPSRGVPTAINCLSTLLKEPMVRSSFVQAGGVKLLLPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVILTLKNLLSKGTLGAQMVDLQLPQVVQSLKAQTWSDEDLLEALNYLEEGLKDNIKKLSSYDKYKQEVLLGNLDWSPMHKDPIFWRENITNFEENDFQILRVLLTILDTSGDPRSLAVACFDLSQFVQHHPAGRIIVTDLKAKERVMRLMNHENAEVTKNALLCIQRLFLGAKYASFLQA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0218 525 PIRSF V-ATP_synth_H 82 524 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lele50g0218 525 Gene3D - 88 404 IPR011989 -
Lele50g0218 525 SUPERFAMILY ARM repeat 96 515 IPR016024 -
Lele50g0218 525 Gene3D - 417 517 IPR038497 -
Lele50g0218 525 Pfam V-ATPase subunit H 96 396 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lele50g0218 525 SMART arm_5 269 313 IPR000225 GO:0005515
Lele50g0218 525 SMART arm_5 314 355 IPR000225 GO:0005515
Lele50g0218 525 SMART arm_5 475 515 IPR000225 GO:0005515
Lele50g0218 525 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 89 524 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lele50g0218 525 Pfam V-ATPase subunit H 402 514 IPR011987 GO:0000221|GO:1902600
Lele50g0218 525 FunFam V-type proton ATPase subunit H 416 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0218 Lele-ChrLele50 1285007 1293796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0218 89 525 Primary Pumps ATPases(2) AT3G42050 73.673 0.0 675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0218 50 1285007 1293796 Lele51g0220 51 1224789 1230588 hybridization
Lele50g0218 50 1285007 1293796 Lele52g0222 52 1304938 1312338 hybridization