Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0217 ATGCGTCTCTTTCTCCTCCTCCCAATCTTCTCTTTTGCTCTGCTCTGCTGTTTCCCTCTGATTCTTGGGCAGCAACCTTATATTGGTTTGGGCACAGTGGCCTGCCCTAGAAAGGGCAATTCAAAATCTATTCGGGGTTACACTTGCAACGGCGTTTCTCATAGCTGCCAAGCTTACCTCATCTTCAGATCCCAACCCCTTTACTACTCTGTTTCCACAATTTCTGCTATGCTTGGCTCTGACCCATCTCAACTTTCTGAGATCAACTCTGTTTCTCTGAATGCCACCTTTGCCAATAATCAAATGGTGATTGTTCCCATCAACTGCTCCTGTGCCAGTGATTATTATCAGACTAACACTTCCTACACTGTCCACAGAACAGAAACGTACTTTTTGATTGCTAACAACACTTTCCAAGGCCTCTCAACCTGTCAAGCTCTCATGCATGAAAACAACATTCCTGGAGATCTATTTCCCGGTACAAAACTTACAGTCCCTCTTAGATGTGCTTGTCCCACAAAAACTCAAACTGACAAAGGTGTCAAGTACTTACTGAGTTACACGGTCGACTGGGGTGATTCTGTTTCCTACATCAGTGAAATATTTGGTGCAGCCACTGATCTCACTCTCCAATCAAATATCCTTTCTCCTCAAGATTTGATTTATCCCTTTACCACACTTTTGGTGCCTCTTCAACATAAACCAAACATCTCTCGAATCGTGGTATCTCCTCCTCCACCATCTCCATCCCCCCCGCCTTCATCTTCTACCTCAGGTGGCAGCTCAAATAATAAGACATGGATATATGCAGTTGTTGGAGCTGTCGGAGGTATTGCCTTGATATCACTCGTTCTCCTCGGCATACTTGTTTTCCGTAAACGGTATCCTAGGAGCGAAAAGAACGATGATTCTGCAGTAGTGTCAAAGAGTTTCGAGGCAACGGAGAAACCAGAAGTGGAAAAGGTCGGGGAAGAGTCGGAAACGTTGTCGGAGATAATAACCGGCATAGCTCAGTCTTTCAAAGTGTACGGAATTAAGGAACTACAGCGCGCAACGGATAATTTCAGCTCAAGCTGCTGCATCAAAGGGAGTGTTTATTGCGGGATGATTAATGGTGATTTGGCCGCTATTAAAAAGATGGATGGCGATGTGTCGAAAGAGATAGCAATTCTTAACAAAGTCAACCACTCCAATGTGATACGCCTTTCGGGGGTCAGCTTCAACGAAGGCCATTGGTTTCTGGTTTATGAGTATGCCGCTAACGGATCCTTGACTGATTGGATCTTCGTCAACAACAGGGAGGGAAAGTTTTTGAGTTGGATTCAGAGAATGCAAATAGCATTGGATGTGGCCACAGGACTTGACTATCTGCATAGTTTCACTTCTCCTCCACTTATCCACAAGGATCTCAAGAGTGATAACATACTTCTGGATACTGATTTGAGGGCCAAGATTGCCAACTTGGGGCTTGCAAGATCAGTAGAAGGAGAGGATGATGAATTCCCCATGACGAGGCATATTGTTGGAACAAGAGGCTATATGGCTCCTGAGTATCTAGAAAATGGCATAATCTCTACAAAACAGGATGTGTATGCATTTGGGGTTGTGATGCTGGAGATATTAAGTGGAAAAGAGGTTGCTGGTTTTCATTCAGAAGATAAAGGGAGTTTGTCAGATGTTTTAAGTGTAATTCTTGAAGAGGAGAAGCTGAGGGATTTTATGGATCCTCGTCTGATTGGAAAATTTCCTGTGGAACTTGCTGTGTTTGTGGTTAGAATGATTGATAATTGCTTGAGGAAAGATCCGGCGAGTCGCCCTGCCATGCATGAAATAATGTCTTCTCTCTCTGTAACGTTGAACTCTTCATTGGCCTGGGAAAGATCAGTGACCGTCTCAGGAGACCGGAGCTTTAGAAGGAGCTCTTAA 1926 0.4424 MRLFLLLPIFSFALLCCFPLILGQQPYIGLGTVACPRKGNSKSIRGYTCNGVSHSCQAYLIFRSQPLYYSVSTISAMLGSDPSQLSEINSVSLNATFANNQMVIVPINCSCASDYYQTNTSYTVHRTETYFLIANNTFQGLSTCQALMHENNIPGDLFPGTKLTVPLRCACPTKTQTDKGVKYLLSYTVDWGDSVSYISEIFGAATDLTLQSNILSPQDLIYPFTTLLVPLQHKPNISRIVVSPPPPSPSPPPSSSTSGGSSNNKTWIYAVVGAVGGIALISLVLLGILVFRKRYPRSEKNDDSAVVSKSFEATEKPEVEKVGEESETLSEIITGIAQSFKVYGIKELQRATDNFSSSCCIKGSVYCGMINGDLAAIKKMDGDVSKEIAILNKVNHSNVIRLSGVSFNEGHWFLVYEYAANGSLTDWIFVNNREGKFLSWIQRMQIALDVATGLDYLHSFTSPPLIHKDLKSDNILLDTDLRAKIANLGLARSVEGEDDEFPMTRHIVGTRGYMAPEYLENGIISTKQDVYAFGVVMLEILSGKEVAGFHSEDKGSLSDVLSVILEEEKLRDFMDPRLIGKFPVELAVFVVRMIDNCLRKDPASRPAMHEIMSSLSVTLNSSLAWERSVTVSGDRSFRRSS 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0217 641 Gene3D LysM domain 185 239 IPR036779 -
Lele50g0217 641 Gene3D LysM domain 116 179 IPR036779 -
Lele50g0217 641 SUPERFAMILY Protein kinase-like (PK-like) 338 615 IPR011009 -
Lele50g0217 641 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Lele50g0217 641 ProSiteProfiles Protein kinase domain profile. 280 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0217 641 ProSiteProfiles LysM domain profile. 185 229 IPR018392 -
Lele50g0217 641 FunFam PTI1-like tyrosine-protein kinase 3 419 629 - -
Lele50g0217 641 Pfam LysM domain 122 166 IPR018392 -
Lele50g0217 641 Pfam LysM domain 187 230 IPR018392 -
Lele50g0217 641 SMART serkin_6 355 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0217 641 Gene3D Transferase(Phosphotransferase) domain 1 420 630 - -
Lele50g0217 641 Gene3D Phosphorylase Kinase; domain 1 323 418 - -
Lele50g0217 641 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 627 - -
Lele50g0217 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Lele50g0217 641 MobiDBLite consensus disorder prediction 239 261 - -
Lele50g0217 641 Pfam Protein kinase domain 378 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0217 641 MobiDBLite consensus disorder prediction 240 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0217 Lele-ChrLele50 1277933 1279858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0217 1 628 Receptor kinase-like Gene Family AT2G23770 43.937 4.90e-173 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lele50g0217 Pkinase 4.4e-41 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0217 50 1277933 1279858 Lele51g0219 51 1218738 1223844 hybridization
Lele50g0217 50 1277933 1279858 Lele52g0221 52 1301592 1303469 hybridization