Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0215 ATGGTATGCGTGCTTTTTCCTACGATCGGCGTGGAGGAAGTAGAAGCCTGCAACTATTATGTATGGCCATGGATCCCCCTCAATTGCCCTTCAATTGCATCAATATTATCAATGTGCCACCGCACATATATGGCTCAGAACTATGAATGCGGTTCCCAGCGTGTCAAAGTGCTGGAAGAAAAGAGAAGGGGGCGTGAGTGGGAATATGAGAGAGAAGAGGAGCAGTTTGGGCAAATTGAGAAAGTGTGGAGGCAGAAGAAGCGCAAGTGGGATGAGATGGGGGAGGGAAAAAGTAGGATAAGGGGACAGGACTACGAATTGGCGAGAGGGAGGAAAAGACAAAGAGAAGAACGGAATCGGTGCGCTGCAACTCAATCTAATGATGGGGCCTTCATCTTTATCCTTTGTGACGAAGCGCCACATATATACAGGTGGAAGTTTGCGAATGAGTTCACTGCAGATAGGCTAAGCTTTAGAACATGCCCGATACCTCCCCCCCTCCTTCTTCTGGATTTTGCGAGCTTCAATTCTACCCTATATCACTTTGCTCTTGCTATTGCAATCCTCATCATTTTTGCTCCGGCCCTTACTTGTGCCAAGATGACTGGGTTGGGCATGAACGTGATTGATAAATGTTGGAGACTGGACCCCCAGTGGCAGAGACATCGCCCTCAACTCGCAACTTGTTCTGTGGGGTACGCCGGCAAGATGACCAACAACATTGGCAAAGACCTCGTCCACTATGTAGTCACTGATCCTAGCGACGACCCCATAAACCCAAGACCTGGCACATTGAGATATGGGGCCTCCATGATTCAACGCAAAGTGTGGATCACATTCCAGAGTGACATGCACATTCGGCTTCTTAAGCCCCTCCTCATCAGCAGCTTCACCGCCATTGATGGCCGAGGCGTCACCGTTCACATCGCTCATAGTGCATGCCTGATCGTCTTCAAGGCGACCAACATCATAATACATGGCATTCGGATTCATCGCTGTAAGCCTCAAGCTGCGGGGATGGTGGTGGGTCCGGAAGGAAAGGTAATTCGGGTAGGTCAGGTGGATGGGGATGCCATCAGATTGGTGACTGCCTCCAAGGTATGGATTGACCATAACACGCTGTATGATTGTCAAGATGGCCTTGTCGACGTGACGAGGGGTTCCACCGACGTGACCATCTCTAACAACTGGTTTAGAGACCAAGACAAGGTTATGCTCCTCGGACACGACGACGGTTACGCCAGGGACAAAAACATGAAGGTCACCGTTGTGTACAACCATTTTGGACCTAACTGCAACCAGCGCATGCCTAGAATTCGTCATGGGTACGCACATGTGGCCAACAATCTGTACCAAGGATGGGTGCAATATGCCATTGGTGGAAGCATGGGGCCCAGCCTCAAAAGTGAAGCCAACCTCTTCATAGCACCAACATCTGGAAGCAAAGAGGTGACATGGAGAAAAGAGAGCAATGGGAACGTGGGACAGTGGGAATTCCATTCGGTGAGGGATGTGTTTGAGAACGGAGCATGCTTCACAGAAACCAGAGGAGGGCGGGTACCAAAGCCTTATTATAACAGGGAACAGATTTTTAGAGTAGCAGATGCGAAATATGTGAGGGCACTGACAAGATCATCAGGCGCCTTACGTTGCACCAAAACCTCCAGATGTTGA 1674 0.4976 MVCVLFPTIGVEEVEACNYYVWPWIPLNCPSIASILSMCHRTYMAQNYECGSQRVKVLEEKRRGREWEYEREEEQFGQIEKVWRQKKRKWDEMGEGKSRIRGQDYELARGRKRQREERNRCAATQSNDGAFIFILCDEAPHIYRWKFANEFTADRLSFRTCPIPPPLLLLDFASFNSTLYHFALAIAILIIFAPALTCAKMTGLGMNVIDKCWRLDPQWQRHRPQLATCSVGYAGKMTNNIGKDLVHYVVTDPSDDPINPRPGTLRYGASMIQRKVWITFQSDMHIRLLKPLLISSFTAIDGRGVTVHIAHSACLIVFKATNIIIHGIRIHRCKPQAAGMVVGPEGKVIRVGQVDGDAIRLVTASKVWIDHNTLYDCQDGLVDVTRGSTDVTISNNWFRDQDKVMLLGHDDGYARDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMGPSLKSEANLFIAPTSGSKEVTWRKESNGNVGQWEFHSVRDVFENGACFTETRGGRVPKPYYNREQIFRVADAKYVRALTRSSGALRCTKTSRC 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0215 557 PANTHER PECTATE LYASE 18-RELATED 205 554 IPR045032 GO:0030570
Lele50g0215 557 Gene3D - 206 550 IPR012334 -
Lele50g0215 557 PRINTS Pollen allergen Amb family signature 291 307 IPR018082 -
Lele50g0215 557 PRINTS Pollen allergen Amb family signature 355 376 IPR018082 -
Lele50g0215 557 PRINTS Pollen allergen Amb family signature 528 551 IPR018082 -
Lele50g0215 557 PRINTS Pollen allergen Amb family signature 435 454 IPR018082 -
Lele50g0215 557 PRINTS Pollen allergen Amb family signature 497 521 IPR018082 -
Lele50g0215 557 PRINTS Pollen allergen Amb family signature 457 476 IPR018082 -
Lele50g0215 557 PRINTS Pollen allergen Amb family signature 254 279 IPR018082 -
Lele50g0215 557 SMART amb_all 283 480 IPR002022 -
Lele50g0215 557 Pfam Pectate lyase 304 474 IPR002022 -
Lele50g0215 557 Coils Coil 55 75 - -
Lele50g0215 557 SUPERFAMILY Pectin lyase-like 206 547 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0215 Lele-ChrLele50 1267809 1271866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0215 237 484 Polysaccharide Lyase AT5G09280 72.581 3.83e-140 405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0215 50 1267809 1271866 Lele50g0215 50 1267809 1271866 ECH
Lele50g0215 50 1267809 1271866 Lele51g0218 51 1216638 1217989 hybridization