Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0205 ATGAATCCTCATCCTATGGACGACCACATGGTGCTTGTCTCTCAGCTGTACCCTGGTGCTTACTCTCAAATAATTCCTCAACAAGGGGAGACAAAGCCGAGACGCCGTCGTAAGAAGAACAAGGGAGGAGAAAGCGTAGATGGGGGACTGAAGAAGAGGAAGCTGAGTGCAGAGCAAGTGAATCTTCTAGAGCTAAACTTTGGGAGCGAACATAAATTGGAGTCGGAACGGAAGGACCGGCTGGCGACGGAGCTGGGGTTGGATCCGCGTCAAGTGGCCGTTTGGTTCCAAAACCGAAGGGCTCGTTGGAAGAACAAGAAGTTGGAGGAAGAGTACTCTAACCTTAAGAAAGTCCACGAGTCCACCATTCTCGAGAAATGCTGCCTTGAAACCGAGGTACTGAAGCTGAAAGAGCAGCTTTCAGGGGCAGAGAAAGATATTCAACGGCTTCTGGAGCGAGCCGATAGGGTATCAAGCAGCAACAGTCCCACTTCGTCACAGTCGATGGAAGCTGTGAACCCAACATTTCTGGGAGATCTCAGTGTTGAAGCTTATGACGATGATGTGTTTTACATGCCACAGACCCATTACATCAATAGCATGGACGAGTGGATATACATGTGA 624 0.4936 MNPHPMDDHMVLVSQLYPGAYSQIIPQQGETKPRRRRKKNKGGESVDGGLKKRKLSAEQVNLLELNFGSEHKLESERKDRLATELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKVHESTILEKCCLETEVLKLKEQLSGAEKDIQRLLERADRVSSSNSPTSSQSMEAVNPTFLGDLSVEAYDDDVFYMPQTHYINSMDEWIYM 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0205 207 MobiDBLite consensus disorder prediction 23 51 - -
Lele50g0205 207 CDD homeodomain 51 107 IPR001356 GO:0003677
Lele50g0205 207 Coils Coil 133 160 - -
Lele50g0205 207 FunFam homeobox-leucine zipper protein ATHB-40 45 114 - -
Lele50g0205 207 PRINTS Lambda-repressor HTH signature 77 86 IPR000047 GO:0003677
Lele50g0205 207 PRINTS Lambda-repressor HTH signature 86 102 IPR000047 GO:0003677
Lele50g0205 207 ProSiteProfiles 'Homeobox' domain profile. 51 106 IPR001356 GO:0003677
Lele50g0205 207 SMART HOX_1 49 110 IPR001356 GO:0003677
Lele50g0205 207 Coils Coil 98 125 - -
Lele50g0205 207 ProSitePatterns 'Homeobox' domain signature. 81 104 IPR017970 GO:0000981|GO:0006355
Lele50g0205 207 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 37 167 IPR045224 GO:0003700
Lele50g0205 207 Pfam Homeodomain 52 105 IPR001356 GO:0003677
Lele50g0205 207 Gene3D - 42 114 - -
Lele50g0205 207 SUPERFAMILY Homeodomain-like 51 114 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0205 Lele-ChrLele50 1206234 1207838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0205 1 205 Homeobox Transcription Factor Family AT4G36740 57.009 7.61e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele50g0205 Homeodomain 3.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0075 53 582019 582800 Lele50g0205 50 1206234 1207838 CCT
Lele55g1423 55 20483816 20484772 Lele50g0205 50 1206234 1207838 CCT
Lele56g1355 56 16721885 16722841 Lele50g0205 50 1206234 1207838 CCT
Lele50g0205 50 1206234 1207838 Lele51g0205 51 1155735 1157314 hybridization
Lele50g0205 50 1206234 1207838 Lele52g0208 52 1226869 1228496 hybridization