Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0199 ATGCCAGTTGATTTAGATAATTCTTCGACAGCTTCAGGGGAAGCTAGCGTCTCTTCATCTGGCAATCAGACTGCTCCTCCAAAGTCCACTGCTAAGAAGAAGAGAAATCTTCCAGGAATGCCAGATCCAGACGCGGAGGTGATTGCACTGTCTCCGAAAACCCTTTTAGCGACGAACCGATTCGTGTGTGAAATCTGCAACAAAGGATTTCAGAGGGATCAGAATCTTCAACTCCATCGACGGGGTCATAATCTGCCATGGAAGCTGAGGCAGAGGTCCAGCAAGGAGGTGAGGAAAAGAGTCTATGTCTGTCCCGAGACAACCTGTGTTCATCATGATCCCTCCAGAGCGTTGGGTGATCTCACCGGAATAAAGAAGCATTTCTGTAGAAAACATGGTGAAAAGAAGTGGAAATGTGACAAGTGTTCAAAGAAATATGCGGTTCAGTCAGATTGGAAGGCTCACTCGAAGATTTGTGGCACCAGAGAGTACAAATGCGATTGCGGGACTCTGTTTTCAAGGAGGGATAGCTTCATCACACACAGGGCATTCTGTGATGCGTTGGCAGAGGAGAGCGCAAGAAATCAGCCTCAGCCTCAGACTCAGACTCAAACCCAGACGCAAGCTCCTGAGAAGCCTAATTCAGAGTCTGACCCAAGAAGTCTAAGCGGCGATTCATCACCTACAGTTCCTGCGCCGGCGCCACCGCCACCGCCACCGCCACCACCTACAGCCCCCCCTCCTGCTCCTCAGTCAAATAGCGTCATACCGTCTACGTTGCAGACGAAAAATCCAGAGATGCCCAAAAATCCTTCACGAATCATAGAGGAACCACAGGCCACTACTGCTCTAAACGGTAGCTGTAGCAGCAGTACTAGTTCAACCAGCAATGGCGGCACCAGCAGTACTGTATTTGCAAGCTTGTTCGCTTCCTCCACTGCTTCCGGAAGCCTGCAACCTCCTCCTCAACCTCAAGCTCCTCCTGCATTTACTGACCTAATACGTGCCATGGCTCGTCCGGATCGTCCTGCAGAGCTCTCAGGGCCTTCATCTGCTGAACCAATTTCTCTCTGCCTCTCCACTAGCAATGGGTCGTCAATATTTGGAACAGGAGGACAGGAACGTCGCCAGTATGCCCCACCACCACAACCAGCTATGTCAGCCACCGCGCTACTACAGAAAGCTGCTCAAATGGGTGCAGCAGCAACAAACGCATCGTTGCTTCGTGGGTTTGGTATAGTGTCATCTTCCTCATCCTCACCATCATTAAGCTTGCAAGATAACGTGCCATGGGGTCAGAGGCAAGTAGAACCAGAGAATGCGTCTGTTCACGCAGGGCTTGGTCTTGGACTCCCATGTGACGGTGGATCTGGACTGAAGGAATTGATGATGGGGACGCCGTCGGTGTTCGGTCCAAAGCACACAACACTGGACTTTCTGGGATTGGGGATGGCCGCGGGCGGTGGCACCCCTAGTGGAGGCTTATCAGCACTCATCACTTCCATTGGTAGTGGTCTGGATGTTTCTGCCACAGCAAGACCCTTCGGTAGTGGAGAGATTTCAGGTAAAGATATTGGGAGGAGCTCGTGA 1590 0.5145 MPVDLDNSSTASGEASVSSSGNQTAPPKSTAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPETTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARNQPQPQTQTQTQTQAPEKPNSESDPRSLSGDSSPTVPAPAPPPPPPPPPTAPPPAPQSNSVIPSTLQTKNPEMPKNPSRIIEEPQATTALNGSCSSSTSSTSNGGTSSTVFASLFASSTASGSLQPPPQPQAPPAFTDLIRAMARPDRPAELSGPSSAEPISLCLSTSNGSSIFGTGGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSSSPSLSLQDNVPWGQRQVEPENASVHAGLGLGLPCDGGSGLKELMMGTPSVFGPKHTTLDFLGLGMAAGGGTPSGGLSALITSIGSGLDVSATARPFGSGEISGKDIGRSS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0199 529 Gene3D Classic Zinc Finger 115 195 - -
Lele50g0199 529 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Lele50g0199 529 MobiDBLite consensus disorder prediction 1 30 - -
Lele50g0199 529 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lele50g0199 529 MobiDBLite consensus disorder prediction 229 253 - -
Lele50g0199 529 FunFam protein indeterminate-domain 12-like 40 108 - -
Lele50g0199 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lele50g0199 529 MobiDBLite consensus disorder prediction 190 272 - -
Lele50g0199 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 488 IPR031140 -
Lele50g0199 529 MobiDBLite consensus disorder prediction 193 228 - -
Lele50g0199 529 MobiDBLite consensus disorder prediction 1 44 - -
Lele50g0199 529 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Lele50g0199 529 MobiDBLite consensus disorder prediction 254 268 - -
Lele50g0199 529 SMART c2h2final6 61 83 IPR013087 -
Lele50g0199 529 SMART c2h2final6 102 132 IPR013087 -
Lele50g0199 529 SMART c2h2final6 137 157 IPR013087 -
Lele50g0199 529 Gene3D Classic Zinc Finger 41 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0199 Lele-ChrLele50 1174558 1176841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0199 1 529 IDZ Gene Family AT5G66730 60.701 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele50g0199 None None None