Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0189 ATGGGAGACTACAATGATGCTTTCATGCGCAACCAAAACGCCGCCGTGCAGGCTCGAACCAAAGCTCAGAACCGCGCCAACGTCCTCCAGCTGAAGCTGATTGGACAGAGCCATCCAACTGGTCTCACGGCTAACCTTTTGAAACTGTTTGAGCCTAGGCCTCCGTTAGAGTATAAGCCGCCTCCAGAAAAAAGGAAATGTCCGCCATTAACAGGGATGGCACAGTTTGTGAGCAAGTTCGCTGAACCTGGAGATCCCGAATATTCTCCTCCTGTCCAAGAAGCTGAAACTCCTATGCAAAGAAGAGCTAGGATACACAAGCTAAGATTGGAGAAGGGAGCAGCAAAGGCTGCTGAAGAGCTAGAAAAATATGATCCACATAATGACCCAAATATTTCGGGAGATCCCTACAAGACCTTGTTCGTGGCCAGACTTAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTAGGTATTTTTGAGTATTGCCAAAGGAGTTCGGTAAGAGTTTCCTACATGTTAGGCGTTGTAAATGCTATTTACTTCTTGGCATCATTAGAAGTTATGAACCATAGATGTGTTTTATGCCCATCTCAACAGTTTTTATATGCAAAAATAAATACTTGTGTTTTGTATTTTGATTATAAATAA 681 0.4347 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYSPPVQEAETPMQRRARIHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGPIKRVGIFEYCQRSSVRVSYMLGVVNAIYFLASLEVMNHRCVLCPSQQFLYAKINTCVLYFDYK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0189 226 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Lele50g0189 226 SUPERFAMILY RNA-binding domain, RBD 126 172 IPR035979 GO:0003676
Lele50g0189 226 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 170 IPR000504 GO:0003723
Lele50g0189 226 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 59 168 - -
Lele50g0189 226 Gene3D - 125 183 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0189 Lele-ChrLele50 1110615 1112395 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0189 50 1110615 1112395 Lele51g0187 51 1062024 1066411 hybridization
Lele50g0189 50 1110615 1112395 Lele52g0189 52 1117020 1121398 hybridization