LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g0186	ATGGAGAACAGATGTCTTCCGGATGGGATGATGAAACGAACCACGAGGCAACGCTGGCTCAGAATGGAGAACGGAGTGAAGAGCAATGGAGATGCAAAGTCACCGACTTTGGTAGAAAATAATGAGATCGGGACAGAGGTAGTAGATGTTGAGAATGACGAGCCTTTTATATCAAGGTCCATGGAAGAAGAGGAAAAACAGCTTTTGGAAACTCGAATCAAGGAGGAGGAGGAATCCAAACATGGGACGGATGAGGCACCTAAGCTTAATGAATCTCAGTTTAGCAAGTTGGATGAGCTTTTAACACAAACTCAGCTTTACTCGGAATTTCTACTGGAGAAAATGGATGACATCACACTTGTATTTGCTTGTGCTTTTATTGTGTCAACTTTTTATGCATTCCGATTTATTTCTTCTTGTTGCATAATCTTATATTTGAATTTTTATTACCAGAATGGGGGCGAAAAAGAGGATGAGCCGGTTGAGAAAAAGAGGGGACGTGGCTCAAAAAGAAAAGCAAAATCAGAATATAATAATAAGAAAGCCAAAAGGGCAGTAGCAGCCATGCTTACAAGGTCTAAAGAAAGTGAGAGTGCTGAAGATATGGACCTGACAGAAGAGGAAAGAATTGATAAGGAGCAGAAAGAGCTCATACCTCTGTTGACAGGTGGAAAGTTGAAGCAATATCAAATGAAGGGTGTTAAATGGTTGATCTCCTTGTGGCAAAATGGACTGAATGGGATTTTGGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGTTTCATTGCACATCTGAAAGGGAAAGTGGAACCTTATATTTTCAATACATGCAATAGGTTTGCTCCAACACTCAATACCATTATTTACCATGGTGCCAAGAAGGAAAGAGATGAGATTCGAAGGAAGCATATGCCCGGAACAATTGGCCAAAAATTTCCCATAGTCATCACTTCCTATGAAGTTGCGTTAAATGACGCTAAGAGATGTCTCAGGTTCTACCATTGGAAATATATTGTAATTGACGAGGGACACAGGCTCAAAAACTCAAAATGCAAGTTAGTCCAGATGTTGAAATTCTTACCTGTTGAAAACAAACTTCTTTTAACTGGGACACCTCTACAGAATAACTTGGCTGAGCTATGGTCATTGTTGAACTTCATTTTACCTGACATTTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAGTAATGGAGCAACGAAAGAAGAATTAGAAGAAGGAAGAAGAGCTCAGGCATGCGTTGTAGCTAAGCTCCATTCCATCCTGCGCCCCTTTCTTCTCCGAAGGATGAAGAGTGATGTTGAGCAGATGTTACCACGAAAGAAAGAGATCATTATATATGCCACTATGACTGAACATCAGAAGAATTTCCAGGAACATTTAATTAATAAGACATTGGAGAAATATCTCCGTGAAAAATCTGCAGGGGGACGTGCTTCAAAAAATATTCGTAATGTGGTCATTCAGCTTAGAAAAAACTGTAATCATCCTGACCTCTTAGAGTCGGCCTTTGATGACTCGTTTTTCTATCCACCTGTCGATGAGATGGTTGAACAATGTGGGAAATTCCGTTTACTAGACCGTCTGTTGGCTCATTTACTTGCTCGGAAACACAAAGTTCTAATCTTCAGTCAATGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAAGGGCCTTGAAGTTTGCAGAATTGATGGCAGTGTAAAGCTAGATGAGAGGAAAAGACAGATTCAGGAGTTCAATGATGTGAATAGCAATTACAGGATCTTTCTTCTGAGTACTAGGGCTGGTGGATTGGGAATTAACCTTACTGCTGCTGACACTTGTATCATTTATGACAGTGACTGGAATCCTCAGATGGATTTACAGGCCATGGATAGATGTCACAGAATAGGTCAAACTAAGCCAGTTCATGTTTACAGGCTTGCGACAGCTCACTCTGTGGAGGTACATGGCTACCTTGAATTGTGGTTTGGCGATGGTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGGAAGGGACAATTTCATCAAGAGCGGATTAAGTCCAACCCTATGGATATCAAAGAAGAGGATGAGGAATTGTTGGAGATGCTTCAAGAGGAAGAATCTGCTGAAGACAAAGCGATCCAAACAGATATTAGTGATGAAGACTTGGAGAAGCTTTTGGATCGCAGTGATCTTGTCGCTGGTAACTTAAATTGTCTGAGCAAAATTCCTCTTAAAGGGCCTGGATGGGAGGTGGTGATTCCAACTGGGAGCGTGCTTTCTACTCTGAATAGCTAA	2364	0.4078	MENRCLPDGMMKRTTRQRWLRMENGVKSNGDAKSPTLVENNEIGTEVVDVENDEPFISRSMEEEEKQLLETRIKEEEESKHGTDEAPKLNESQFSKLDELLTQTQLYSEFLLEKMDDITLVFACAFIVSTFYAFRFISSCCIILYLNFYYQNGGEKEDEPVEKKRGRGSKRKAKSEYNNKKAKRAVAAMLTRSKESESAEDMDLTEEERIDKEQKELIPLLTGGKLKQYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFIAHLKGKVEPYIFNTCNRFAPTLNTIIYHGAKKERDEIRRKHMPGTIGQKFPIVITSYEVALNDAKRCLRFYHWKYIVIDEGHRLKNSKCKLVQMLKFLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGATKEELEEGRRAQACVVAKLHSILRPFLLRRMKSDVEQMLPRKKEIIIYATMTEHQKNFQEHLINKTLEKYLREKSAGGRASKNIRNVVIQLRKNCNHPDLLESAFDDSFFYPPVDEMVEQCGKFRLLDRLLAHLLARKHKVLIFSQWTKILDIMDYYFSEKGLEVCRIDGSVKLDERKRQIQEFNDVNSNYRIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAHSVEVHGYLELWFGDGRMLKRAFSKLKLEHVVIGKGQFHQERIKSNPMDIKEEDEELLEMLQEEESAEDKAIQTDISDEDLEKLLDRSDLVAGNLNCLSKIPLKGPGWEVVIPTGSVLSTLNS	787

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g0186	787	Coils	Coil	714	734	-	-
	Lele50g0186	787	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	238	393	IPR014001	-
	Lele50g0186	787	Pfam	Helicase conserved C-terminal domain	540	651	IPR001650	-
	Lele50g0186	787	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	196	445	IPR027417	-
	Lele50g0186	787	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	447	749	IPR027417	-
	Lele50g0186	787	MobiDBLite	consensus disorder prediction	156	177	-	-
	Lele50g0186	787	SMART	ultradead3	222	404	IPR014001	-
	Lele50g0186	787	MobiDBLite	consensus disorder prediction	24	44	-	-
	Lele50g0186	787	FunFam	lymphoid-specific helicase isoform X1	202	469	-	-
	Lele50g0186	787	Coils	Coil	58	79	-	-
	Lele50g0186	787	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	541	715	IPR001650	-
	Lele50g0186	787	CDD	SF2_C_SNF	527	661	-	-
	Lele50g0186	787	Gene3D	-	227	446	IPR038718	-
	Lele50g0186	787	Pfam	SNF2-related domain	229	515	IPR000330	GO:0005524\|GO:0140658
	Lele50g0186	787	Gene3D	-	451	761	IPR027417	-
	Lele50g0186	787	SMART	helicmild6	567	651	IPR001650	-
	Lele50g0186	787	FunFam	Chromatin complex subunit A 106	455	693	-	-
	Lele50g0186	787	PANTHER	SNF2/RAD54 HELICASE FAMILY	57	732	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g0186	Lele-ChrLele50	1094899	1101304	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele50g0186	212	668	RAD5 or RAD16-like Gene Family	AT3G16600	23.438	1.35e-24	107

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Lele50g0186		SNF2_N	1.3e-44	CL0023