Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0178 ATGGAAGACGCTACACTCATTGACTCTATGGACTTGAAGGTGAGAGAGCTATTGAAGGAGGTACAGCTAGACCATTCTCCTCCATTCACCAAGTTCGTTGATGACACTGTCTCCGCCATCAAAGCATCCGTCGATAAGATCCCGGAAGATGTTAAGTACTTGGATACTTCTGCATCTTTTGATAAGGTTGAATGGTCTATGCTGCAAAATGAAGCCCGAAAACCTATACTAATTCTTCATCCAGCTGTAAAGCTTGCTGAAGTTCCTGGTGTTTGTATAAGAATAATTCCATCAGCGGTGTCTTTATTTAGCATATCAAGGCTGAACCTGAATCGTAATAACATTCATACTCCTGATCAAGGTCTTGAGGCTACACCAAATTACAATAGTAGTATTCTGGAAGATATGTTTTTAGAGGATACCGAATTTATTGATAAAAGTTTCTCTAGATGGAAGGAACTAAGAGAAGCTTCAACTTTGCTTAAGGTTTGGGCTCAACAGAGAAGTTCAATATATGTTCATGATTGCCTAAGTGGATTTTTGATCTCTGTCATTCTCGCATACCTTCTGACAAGGCAGCAAATCAGCACATCAATGAAGGCAATCCAAATATTTCGTGTTACCATGAACTTTATTGCCAATTCAGAGTTGTGGAGCCGTGGGCTTTATTTTCCTCAGGAAGGCCAGAGTAACATTACAAAAGAGGAAAGGATTCAATTTAAAAAGTCATTTCCAGTTGTTATTTGCAATCCATCTGGAAGATTCAATTTGGCTTTCCGGATGTCTAGAATTGGTTTTGCTGAGCTTCAAGATGAGGCTGCTTTGACAGTTAAATGCTTGGATAAGTGTACAGATGGTGGATTTGAGGAAATTTTTATGACTAAGATTGACTATGCTGCTAAATACGACTACTGCATAAGAGCAAAGTTCATTCGTGTTACCTGGAGAAATATGCAGTCACAGTGGAGTGTAGATGATGGCCTGTCTACACTTGATAAAGAACCTCTACTTATTGGAATTTCAGTGAGTAATTTGGAGAAAGCATTTAGGATGGTTGATATTGGCCCAAATTCTGAAAATACTGAAGAGTTTTGGGGGGAAAAAGCTGAGCTTAGGCGATTTAAAGATGGTAGAATTGCAGAAAGCACAGTGGAGCATATACTCAGTCGATATCTCTCTCTGTCGAAAGAAAATATTGTAGTTGCTGTGGATCAACTTGATTTCTCTTTGCGACATGGAGCTGGAGATCCAATATCATATTCTGAGAGTTTGCTTAAGGCATTTGATGTCTTATCGAAGCGCTTGCGTCTAGTTCCAGACATCCCTTTGAAGGTGTCTAGTGTACAACCTTTAAACTCTGCTTTCAGGTCTACATCAGTCTTTCCTCCTGAACCTCATCCTTTGGCTAATGAAAACATTGAGTCTGTTAAACTGAATAATGCCATTCCTTCGTGCATTCAACCACTGGAAGTTATGATTCAGCTGGAAGGTTCTGGTAACTGGCCAATGGATGAAGTTGCAGTGGAAAAGACAAAATCTGCCTTCCTTCTTCAGATTGGAGAGAGCCTTAAAAAACTATGGGGAATGCCATGTATCGCAACTGAGGATAATGTGGATGTATTAGTATCTGGATATGCATTTCGTCTTAAAATTTTGCATGAGAGGGGCCTCAGTTTGCTTAGCAAGGAATGTGAGAATGGTCAAGCAAAGCGTGTTTCTTCGACAGACAAGAAACTTTTCATCTGTAGTCAGCATTCTAGCATGATTAATGGATTACAAAGCCGTTACCCAATATATGGATCAGTAGCTAGACTTGCAAAACGATGGGCTGCATCACATCTATTTTCAGCTTGCTTGGTAGAGGAAGCAGTTGAGCTTTTGGTTGCTTATCTCTTTCTTAATCCTTTGCCATTTAATACTCCTTGCTCAAGGATAACTGGATTTTTAAGATTCCTGCGGTTACTCTCAGAGTATGACTGGACATTCTCTTCATTGGTTGTTGACATAAATAATGACTTAAGCCAAAGCGATAAGAAAGAAATAACTGATAACTTTATGTTAAGCAGAAAGGTTCAGGGAGAGAATGGACTAAGGCCAACTATGTTCATAGCAACGGTTTATGATAAAGCATCTGAGGCTTGGACTGGATCATCTCCAAGCGCGTGGGAACTTAAACGGCTGGTGGCTTATGCCCGTAGTAGTGCAAACTTGTTGACGAAACTTATATTTCAGGATCACATTGGCCCATACAGATGGGAGTGCCTTTTCCGAACTCCTTTGAACACTTATGATGCCATAGTTCTTCTTCACAGAGATAAACTCCCTTATCCTCAAAGACTTCTCTTCCCGTCAGAAGTTGATCATGGAACACATATTGCTAGAGGACATGCTAGCAAGTGTTTCCAACCTGTGCTTTTGCCAAGAGATTTGAAGGGGAGGCCAGATGAAGTTAAAAGCAAGTTGCTGGTTGACTTTGATCCATTAAGGTGCTTCATCAAGGATTTAGAGAAAGAGCTCTCCACCACGTTCAAGGTATGGTACGATTTGTTGGGAGGTGATGCTGTTGGCCTAACGTGGGGTGAAAGTTATTCTTCAAAGGTGCTGACCAGAATGGGTTCCAACAACAGCCAGACTGATGAGAAACTATTTGTCACCCCTCAACCAAGAGTTACATTCTGCCAAAGGGGAAAGTCCAAGAATGGCAGCTTCGTGTCTACTTTAAGAAATCACTTTCATGAATTCATCCATGCTTCCATGGATGAACACAGGACATGCTTGAGAAATACAATGCAAAAGTTACTTGGAAGAAAGAGTGGCAGCCCCAGTGAAAATGAAACATCTCTACCACTTCAATCAACTACTGAGGATTAG 2871 0.4065 MEDATLIDSMDLKVRELLKEVQLDHSPPFTKFVDDTVSAIKASVDKIPEDVKYLDTSASFDKVEWSMLQNEARKPILILHPAVKLAEVPGVCIRIIPSAVSLFSISRLNLNRNNIHTPDQGLEATPNYNSSILEDMFLEDTEFIDKSFSRWKELREASTLLKVWAQQRSSIYVHDCLSGFLISVILAYLLTRQQISTSMKAIQIFRVTMNFIANSELWSRGLYFPQEGQSNITKEERIQFKKSFPVVICNPSGRFNLAFRMSRIGFAELQDEAALTVKCLDKCTDGGFEEIFMTKIDYAAKYDYCIRAKFIRVTWRNMQSQWSVDDGLSTLDKEPLLIGISVSNLEKAFRMVDIGPNSENTEEFWGEKAELRRFKDGRIAESTVEHILSRYLSLSKENIVVAVDQLDFSLRHGAGDPISYSESLLKAFDVLSKRLRLVPDIPLKVSSVQPLNSAFRSTSVFPPEPHPLANENIESVKLNNAIPSCIQPLEVMIQLEGSGNWPMDEVAVEKTKSAFLLQIGESLKKLWGMPCIATEDNVDVLVSGYAFRLKILHERGLSLLSKECENGQAKRVSSTDKKLFICSQHSSMINGLQSRYPIYGSVARLAKRWAASHLFSACLVEEAVELLVAYLFLNPLPFNTPCSRITGFLRFLRLLSEYDWTFSSLVVDINNDLSQSDKKEITDNFMLSRKVQGENGLRPTMFIATVYDKASEAWTGSSPSAWELKRLVAYARSSANLLTKLIFQDHIGPYRWECLFRTPLNTYDAIVLLHRDKLPYPQRLLFPSEVDHGTHIARGHASKCFQPVLLPRDLKGRPDEVKSKLLVDFDPLRCFIKDLEKELSTTFKVWYDLLGGDAVGLTWGESYSSKVLTRMGSNNSQTDEKLFVTPQPRVTFCQRGKSKNGSFVSTLRNHFHEFIHASMDEHRTCLRNTMQKLLGRKSGSPSENETSLPLQSTTED 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0178 956 Pfam Nrap protein domain 6 760 873 IPR035371 -
Lele50g0178 956 Gene3D - 128 298 - -
Lele50g0178 956 Pfam Nrap protein domain 3 285 384 IPR035368 -
Lele50g0178 956 Pfam Nrap protein PAP/OAS-like domain 154 295 IPR035367 -
Lele50g0178 956 Pfam Nrap protein PAP/OAS1-like domain 5 596 745 IPR035370 -
Lele50g0178 956 Pfam Nrap protein domain 1 54 140 IPR035082 -
Lele50g0178 956 MobiDBLite consensus disorder prediction 933 956 - -
Lele50g0178 956 PANTHER NUCLEOLAR RNA-ASSOCIATED PROTEIN 307 881 IPR005554 -
Lele50g0178 956 Pfam Nrap protein nucleotidyltransferase domain 4 419 593 IPR035369 -
Lele50g0178 956 FunFam Nucleolar protein 6 128 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0178 Lele-ChrLele50 1040212 1050913 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0178 50 1040212 1050913 Lele53g0052 53 407137 407976 CCT
Lele50g0178 50 1040212 1050913 Lele54g0053 54 449670 450517 CCT
Lele50g0178 50 1040212 1050913 Lele55g1445 55 20663817 20664654 CCT
Lele50g0178 50 1040212 1050913 Lele56g1380 56 16919213 16920045 CCT
Lele50g0178 50 1040212 1050913 Lele51g0173 51 991765 1000252 hybridization
Lele50g0178 50 1040212 1050913 Lele52g0176 52 1048549 1059126 hybridization