Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0176 ATGATGCCCCGTTGCTGTAGCTCCCAGGGGCACTCGATGGGACCGTGTACTTGTGGTTTGATCCACAGTCAAACCAACTCCTTCTCTATGCTATTCTCTATGCCAAACAACCACAAATCCTACGGTGACTGCGGCGATATGTATTCTTTCGCCTCCTCTCCTTCCTCTTCTGTTGACTGCACCCTATCTCTCGGCACCCCATCCACCCGTTTATCCCAGGACGAAGAAAAACTTAACCACCGTGACCACCGCTCCGTTTCAAACATCTGTTGGGATTTATTACAATCCAAACAGACCTCTCAATCCCACACTAAGTCTAGTCGTGGCACCAATAACAGTAACTCCTCCAATAACGATCCTCTCTTAGCTCGTCGTTGTGCTAACTGTGACACAACTTCCACTCCCCTCTGGAGAAATGGCCCTCGAGGTCCCAAGTCGCTGTGCAATGCCTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGGGCGGGTGCTGTAGCCGCCACGACGGCGGCCAACTCAGGCGGTGTAATGGACTCAGCGCAGATGTTTTCCGGACACCACAACGCTTCGTGGTACGCGCACTCTCAGGGCCAGAAAATGCAGTGCCTCTCTCCGGGGATGGGCAACGAGTTTCGCTTCGGGGACGACGCCGACCAAGACGCCGAGCGCGGCATTCAGTTTCTCTCTTGGAGACTCAACGTTACGGACAGACCGAGCCTCGTTCATGATTTTACGAGATGA 741 0.5304 MMPRCCSSQGHSMGPCTCGLIHSQTNSFSMLFSMPNNHKSYGDCGDMYSFASSPSSSVDCTLSLGTPSTRLSQDEEKLNHRDHRSVSNICWDLLQSKQTSQSHTKSSRGTNNSNSSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAGAVAATTAANSGGVMDSAQMFSGHHNASWYAHSQGQKMQCLSPGMGNEFRFGDDADQDAERGIQFLSWRLNVTDRPSLVHDFTR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0176 246 CDD ZnF_GATA 125 157 IPR000679 GO:0006355|GO:0043565
Lele50g0176 246 SMART GATA_3 120 172 IPR000679 GO:0006355|GO:0043565
Lele50g0176 246 ProSitePatterns GATA-type zinc finger domain. 126 151 IPR000679 GO:0006355|GO:0043565
Lele50g0176 246 MobiDBLite consensus disorder prediction 100 119 - -
Lele50g0176 246 Pfam GATA zinc finger 126 160 IPR000679 GO:0006355|GO:0043565
Lele50g0176 246 ProSiteProfiles GATA-type zinc finger domain profile. 120 156 IPR000679 GO:0006355|GO:0043565
Lele50g0176 246 Gene3D - 122 182 IPR013088 GO:0006355|GO:0008270
Lele50g0176 246 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 161 - -
Lele50g0176 246 PANTHER GATA TRANSCRIPTION FACTOR 18 10 246 IPR044272 GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0176 Lele-ChrLele50 1031083 1031962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0176 11 246 C2C2-Gata Transcription Factor Family AT3G50870 43.972 2.34e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele50g0176 GATA 5.9e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0176 50 1031083 1031962 Lele53g0051 53 401003 403360 CCT
Lele50g0176 50 1031083 1031962 Lele54g0052 54 437381 440007 CCT
Lele50g0176 50 1031083 1031962 Lele55g1446 55 20668859 20671042 CCT
Lele50g0176 50 1031083 1031962 Lele56g1381 56 16924196 16926643 CCT
Lele50g0176 50 1031083 1031962 Lele51g0172 51 985898 986764 hybridization
Lele50g0176 50 1031083 1031962 Lele52g0175 52 1040004 1040890 hybridization