Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0173 ATGGAACTCATGAGAGGTTTAGATAAGGAAATAGAGATGCCTTTACCAACCACTTCAGGTTATAATCCCTCCAATAATAGGGACTCATCTTCTCCAACTCTAGCTTCAACAGCAGCCGAAACCAGTAGTGATCAACCTCCTCAAACTAATTCTGACCACTATCATCTTCATCATCCTGCTCCTTCTCTGCCATCGAACCCACTTCAGCAATCGCAGAGAAACACAGGAGATCCAGATCCGCCAAGCGTAACAGCGATCACACCAGTTGCTGGCAGATCAAACCCAAGACCAGCAACAGCGACGACAATTAGGTACAGAGAATGCTTGAAGAATCATGCGGCGAGCATGGGAAGACACGTCGTGGATGGATGCGGCGAGTTCATGCCTAGCGGGGAAGAAGGAACTCCACAATCCTTGAGATGTGCCGCTTGTGACTGCCACCGGAATTTTCACCGGAAAGAGACCGAAGGTGAACCTCAAACTAATGTCCTCAATTACTACACCTACCCTCCCGGCAAAAGCAATAACGGACAAAGTAGGATTCTTTCTCCTCAGTTTCCGCCACAACCTCCTCTAAATCACCATCACCATCAGCATATGAGATTTTCAGGAGGGTCGTTCCCGCCGTTGATGATGGCCTTCGGCGGCGGAGGCGGGGTGGCGGAGTCTTCATGCGAAGGTCTGAACACGTTTCAGTGTAATGATGCGGGAGGGCAAGGGTCAGTGCAGGCGGCAGCGTCATCGAGGAAGAGGTTTAGGACCAAGTTTAGCCAGGAGCAGAAGGATAGAATGATGGAGTTCGCTGAGAAGCTGGGATGGAGGATCCAGAAACATGACGAACAAGAAGTACAGCAGTTTTGTAATCAAGTGGGTGTCAAGCGGCTGGTTTTCAAGGTTTGGATGCACAATAACAAGCAGGCCACGAAGAAGAAACAAATGTAA 942 0.4936 MELMRGLDKEIEMPLPTTSGYNPSNNRDSSSPTLASTAAETSSDQPPQTNSDHYHLHHPAPSLPSNPLQQSQRNTGDPDPPSVTAITPVAGRSNPRPATATTIRYRECLKNHAASMGRHVVDGCGEFMPSGEEGTPQSLRCAACDCHRNFHRKETEGEPQTNVLNYYTYPPGKSNNGQSRILSPQFPPQPPLNHHHHQHMRFSGGSFPPLMMAFGGGGGVAESSCEGLNTFQCNDAGGQGSVQAAASSRKRFRTKFSQEQKDRMMEFAEKLGWRIQKHDEQEVQQFCNQVGVKRLVFKVWMHNNKQATKKKQM 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0173 313 MobiDBLite consensus disorder prediction 63 81 - -
Lele50g0173 313 FunFam Zinc-finger homeodomain protein 2 237 310 - -
Lele50g0173 313 Pfam ZF-HD protein dimerisation region 103 155 IPR006456 -
Lele50g0173 313 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 75 306 - -
Lele50g0173 313 MobiDBLite consensus disorder prediction 1 101 - -
Lele50g0173 313 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 104 154 IPR006456 -
Lele50g0173 313 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 105 154 IPR006456 -
Lele50g0173 313 SUPERFAMILY Homeodomain-like 239 310 IPR009057 -
Lele50g0173 313 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 249 306 IPR006455 -
Lele50g0173 313 Gene3D - 235 310 - -
Lele50g0173 313 MobiDBLite consensus disorder prediction 17 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0173 Lele-ChrLele50 1010658 1011599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0173 90 313 ZF-HD Transcription Factor Family AT2G18350 52.423 7.13e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele50g0173 ZF-HD_dimer 8.3e-31 No_clan