Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0168 ATGGGTACTAATGCCGGTGAAGTTGCACACACGCTACCAAATCCTTGCTCGTTCAAGGTACATCATACAATGTGCATGGAACTCATGAGATTAGTCGATAGAATCTCAAATATATTACCAGATATAGAGGCAACACGCCCTCGATGCTCATCGGGAATGCAGTCTCTGTGCTCTCTGAACACTGCTATTGATAAGGCCAAACTCATTCTGCAACATTGCTGTGATTGTAGCAAACTATACCTGGCATTGACGGGAGATACGGTCCTCTTAAGATGCTTAAAGGCAAGAAATTCATTAGAGAAAAGCTTGGACAAAATTCACAGTATGGTTTCAGTTATGTTGGCGGCAGAGATTTCTCAAATAATTGATGATCTGGAACGTGCAACATTTGTTCTGGACTCGTCCGAAGAAGAGGCTGGGAGGGTTGTGAGAGAACTGCTCCAGAAAAGTCCTTCGGCATCGGATTCAATTAAAGATTCTGAGATTAAATCTCTTCAAATTGCAGCAGCAAGACTTAATATTACATCCCCAAAGGCCATCTTAATAGAGAAAAGATCTATTAAGAAATTGCTCAATAAACTTGGGCCAAATGAACCGACGAAAAAGATGATCTTGAAGTATCTTTGGTATCTATTGAAAAAGCATGGAAACCATATCATTGGAGGTCAAATTGGAAAGATCCATGCTCTAAGTGAAGAACCAATACTTGCTACTGATAAATCAGATCACAGTCCTTCTGTTCAACGTAGAGCTCTCTCCCCTGAGGAATACAAGTGTCCAATATCTTCAAAGTTGATGTATGATCCTGTTGTCATTGCTTCTGGGGAGACATATGAAAGGATGTGGATACAAAAATGGTTTGATGAAGGTCATGATATATGCCCAAAAACTGGGAAGAAATTGGCCAATATGTCAGTGACACCAGACATTGCAATGAAGGATTTAATATCAAAATGGTGCAGAGATAATGGAGTCATGATTACTGATCCTAGCAGGCGAGCAGCAAAGTTCAGTTCACGAGAATCTTCCTTTGCTTCCATTAGGAGCTTTGACGTTTCATTGAATAAATTAAACTTGCCAGTGGATCTTAGTATCGTGTCACTTGGATCAACAGATAGTTATGATTCAGATTCCTCACAGACTGTAACTACTCCTCACTTAAATTTTATGATCATGAGGACCAACGATGGTTCTTACAGTCATCGGTCTCATGCACACTTAGGTGGTGCAGATTCAATGCTTTTGTCTCAGTTCCCTGATCTTCAATGTTGCCAAGTCATCGAAGATCTGAAAGATTGTTTGAAAAGCAATTGCCAAGCTTCTTGTTCTTCGTCGGCTGAGGGTTTCTCTGAATCACTAGTCGAATTTCTGAACAAGGCATATGACCTGCAAGACATAAAATCTCAGAGAGCGGGAATGCAGCTGTTCTTAGAATTTATAAACAATCACAGAAACAGCCTAACTTATCTAAGCGAGGATTCATTCAGTGTATTGGGCAATCTTCTTGACTCTGAGATTAAAGGAGAAGCACTTGCCATAATGGAAAAACTGTCCGAGTGTGAGCATTGTAGAACTAAAATTGCAGCATCCAGTGCACTATCTTCCATTTTAAAGATTCTTGACTCTGGGAGCAGAGAGCTTCAACAACAATCTATTCGAATAATCTACAATTTGTCGTTCAATAGCGAGGCCTGTTACCACATGGTATCTTTCCAGTGCATCATCCCAGGATTATTACTGCCATTTTTCAAAGATGGGACTTCGTTAAGATACTGCATATGCGTATTGAAAAACCTTTGTGATATAGAAGAGGGTAGGGTTTCTGTTGCCAAAACAGAAGGATGCATATCTGCTACTGTTGAAATTCTTGAGATTGACAGTGACGAGGAACAAGAACATGCACTGGCTGTCTTACTCTCTTTATGCTCTCTGAGTTTGGATTACTGTCAGCTGGTCATGAGACAAGGGGAATGTGTTATTACTTCCCTTTTCTTTATTGCCAAAAATGGCAAAGACAAAGGAAAGGCGAGTGCATTGAAGTTGCTCGGACTTTTGACGGATATTGTAAGCGTTGAAAATGAAGAATGCTTTATATCAACTCCCTGCACTTCTCAAGAACCTAACAATCATCCTCAACAAAAGAAATCATCAAGAATATCTGCTCCTTTCAAGAAGTTTTTTGTTTCCTGCATTACATGTAAGAGATGA 2208 0.3995 MGTNAGEVAHTLPNPCSFKVHHTMCMELMRLVDRISNILPDIEATRPRCSSGMQSLCSLNTAIDKAKLILQHCCDCSKLYLALTGDTVLLRCLKARNSLEKSLDKIHSMVSVMLAAEISQIIDDLERATFVLDSSEEEAGRVVRELLQKSPSASDSIKDSEIKSLQIAAARLNITSPKAILIEKRSIKKLLNKLGPNEPTKKMILKYLWYLLKKHGNHIIGGQIGKIHALSEEPILATDKSDHSPSVQRRALSPEEYKCPISSKLMYDPVVIASGETYERMWIQKWFDEGHDICPKTGKKLANMSVTPDIAMKDLISKWCRDNGVMITDPSRRAAKFSSRESSFASIRSFDVSLNKLNLPVDLSIVSLGSTDSYDSDSSQTVTTPHLNFMIMRTNDGSYSHRSHAHLGGADSMLLSQFPDLQCCQVIEDLKDCLKSNCQASCSSSAEGFSESLVEFLNKAYDLQDIKSQRAGMQLFLEFINNHRNSLTYLSEDSFSVLGNLLDSEIKGEALAIMEKLSECEHCRTKIAASSALSSILKILDSGSRELQQQSIRIIYNLSFNSEACYHMVSFQCIIPGLLLPFFKDGTSLRYCICVLKNLCDIEEGRVSVAKTEGCISATVEILEIDSDEEQEHALAVLLSLCSLSLDYCQLVMRQGECVITSLFFIAKNGKDKGKASALKLLGLLTDIVSVENEECFISTPCTSQEPNNHPQQKKSSRISAPFKKFFVSCITCKR 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0168 735 SUPERFAMILY ARM repeat 465 695 IPR016024 -
Lele50g0168 735 SMART Ubox_2 256 319 IPR003613 GO:0004842|GO:0016567
Lele50g0168 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 328 IPR013083 -
Lele50g0168 735 CDD RING-Ubox_PUB 257 299 IPR045210 -
Lele50g0168 735 Pfam U-box domain 254 323 IPR003613 GO:0004842|GO:0016567
Lele50g0168 735 Gene3D - 422 703 IPR011989 -
Lele50g0168 735 PANTHER U BOX DOMAIN-CONTAINING 25 685 - -
Lele50g0168 735 ProSiteProfiles U-box domain profile. 252 326 IPR003613 GO:0004842|GO:0016567
Lele50g0168 735 SUPERFAMILY RING/U-box 254 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0168 Lele-ChrLele50 986601 989336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0168 8 723 U-box Gene Family AT4G36550 35.995 5.37e-130 400
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0168 50 986601 989336 Lele52g0168 52 990669 994237 hybridization