Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0167 ATGAATGATCTGATGACGAAATCATTTCTAAGTTATGTTGAACTGAAGAAACAGGCCCGAAAGGACCTTGAAGCCGATCTTGACATCGAAGCGGGAAAATTCAACCCCATTGAAGACCAAAACCTCTCTCAGTTCTTTGAAGAAGTTGATGCCATCAAATACGAAATGGAAGAGACTACCAATCTCTTATTGGATCTTCAACAACTGAATGAAGAAACAAAATCAACCCACAGCACGAAAGTTCTTCGTGGGCTCAGAGACCGAATGGAGTCAGACATGGTCACCATTCTTCGCAAAGCAAATATCATCAAGACAAGGCTTGAATCGCTTGACCAATCCAACGTTAAAAATCGCAAAATATCAGAATCCTTTAAAGAAGGAACCCCAGTCGATAGAACGAGAATATCAGTCACAAGTGGCCTAAGAGTCAGACTCAGAGACTTGATGAATGAGTTTCAATCCCTGAGAAACAAGATTCTATCTGATCACAAGGAGGAATTAAAGAGAAGATACTACACTGCAACAGGGGAGATACCAAGCGAAGAAATAGTGGAGAAGATGGTTTCTGGGAGTGTGAAAGTTGATGTTTTCAAAACAGAGGCTGATAATATGACGGCTGAGACTCAGGTTAGGCACCAGGCTGTGATGGATATACAGAGAAGTTTGGATAAACTTCACAAGGTTTTTCTTGACATGGCTATTATTGTGGAGACACAAGGCGAGAAAATGGACAACATTGAACATAATGTGGCCAATGCCAGGAGCTTCGTTCATGGTGGGACTAATAGTCTTTACTATGCTAATCAGATGAGGAAGAACAAAAAATGGGCATGGTGGGTTTGTGCTGTGGGACTGATTATTCTTTTGGTATGCTTAATTGCACTCTTGGCTTCTTGA 897 0.4125 MNDLMTKSFLSYVELKKQARKDLEADLDIEAGKFNPIEDQNLSQFFEEVDAIKYEMEETTNLLLDLQQLNEETKSTHSTKVLRGLRDRMESDMVTILRKANIIKTRLESLDQSNVKNRKISESFKEGTPVDRTRISVTSGLRVRLRDLMNEFQSLRNKILSDHKEELKRRYYTATGEIPSEEIVEKMVSGSVKVDVFKTEADNMTAETQVRHQAVMDIQRSLDKLHKVFLDMAIIVETQGEKMDNIEHNVANARSFVHGGTNSLYYANQMRKNKKWAWWVCAVGLIILLVCLIALLAS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0167 298 PANTHER SYNTAXIN 45 287 IPR045242 -
Lele50g0167 298 SMART tSNARE_6 200 267 IPR000727 -
Lele50g0167 298 SUPERFAMILY t-snare proteins 40 260 IPR010989 GO:0016020|GO:0016192
Lele50g0167 298 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Lele50g0167 298 Coils Coil 56 76 - -
Lele50g0167 298 SMART SynN_4 37 164 IPR006011 GO:0016020
Lele50g0167 298 CDD SynN 42 191 IPR006011 GO:0016020
Lele50g0167 298 Gene3D - 38 170 - -
Lele50g0167 298 Pfam Syntaxin 44 240 IPR006011 GO:0016020
Lele50g0167 298 CDD SNARE_syntaxin1-like 206 264 - -
Lele50g0167 298 FunFam Syntaxin 132 198 297 - -
Lele50g0167 298 Pfam SNARE domain 242 290 IPR000727 -
Lele50g0167 298 Gene3D - 196 297 - -
Lele50g0167 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0167 Lele-ChrLele50 982640 983536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0167 1 298 SNARE and Associated Proteins AT2G18260 61.564 1.07e-131 374