Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0162 ATGGAGAATTCTCCGCCGAATGGAAAGTTTCCTCCACGGAATCCGAATTCCAGATTCTCGGCTAAGGAGGGAAGAAGTGGGTACGAGCCATCAGACACAGAGACAGAGTGGCAAGAAGTTCCCCGACATGAACGAGAGAGAAAGGATCTGACTTTGGGACCTGAAGAAGCTAAAGTCCTCAACTTCAGGAATAATAAAAGTCCCATGGCACTACACAGAAGGCATCCTTCAAAATTTGAACTCGAAATCTCATCTCCTGCTCCGTCTTCAGTGGCAAGCTCAGCACGAAGGAGACCCCAAAGTAGATCGCCGTACAGGCCCTTCAGAGCCGACGATGAGGCTCTAAATCCCATACCTGGTTTGACAAATCCTGACCTTGGAAGGCATGCATCTCCGTATCAACCTGAAAGAGAAAATCTCAATTGGAGAGCAGCGAACAGAGTAGGCGAGAAACCAAACCAGAGGAGAGCAATGACTGCTCCGAGGCAAAGGGGAAGAGAAAGGGAAACATCCCACGGGATCAATCCTTCAATAGGAGAGATCAACGAGAAGGTTGCTGAGGCAAATTTTTCAAGAGATCCTGTTAATGACGAGCTCATAATAACTAGTACAGAGTCGAGTTTCGCGGGTGATATTTTCTTTTCTCGTGAATACAATGCCATGATTAAGCAGAAGACCTTGTTAACAAAACCAAACATTGATGTTGAAACCCAGTTTAATAGCTCGAAGCCTAAGGTCCTTCCCCCAATGGGCACCCCTTATCATCAGCATCATCATCATCATCCAAACAGAGGAAATGGTCGTCTCAATAATGTGAACATACAAGGTACATCATCTAGTACTACTATGCTGTCTCGATCAAGTACGATTTCTAGTAGTGATGCTAAAAGCAAAAAGAATAGTGGGAATTTAAGCTCTAGCAGTAGTATGAAGAGTGATGTTAGTTGGACAAGTGCGAGCATTCAGAGGTTCATAATGAACAGGAAAAAGAACCATGCAGACGCATGGTTTGCTTGCATGAGAAAAGTAGGCAGGACATCGAATAAGTCGCCAGAACATCGATCGGTTGATGAGGCTTCTATCATTGAGAAAGCTTTCGTTCTCCAAAGCCTCCCACAATTCTGGGCAGATAAGCATCAACCCACCTCACTCGATGGCTTCATTTGCCACCAACAAGAAGCCCAGCTTCTCAAGGAATTGGCGTCCCAAGACGTGTGTCCTCATATTCTGCTTAAAGGACCAATTGGTTCAGGAAAAAGAGCTCTATCAATGGCTCTTCTGCGAGAAATATTCGGTGACGCAACCTCCAATCTATCTCATGATTTAAGAAATTTCACCATCCAGGAAAGGAGGCCCGTGAAAATCACTGTTCCGATAACGTCCAGTTCTCATCACATGGAGCTCAATGTAAATTTGGAACCTAATGCTAAATATGCTTTAATGGGATTAGTTAAGGAAATAAGCACCGAATATGCCATTACCCCTGAAGTCAGTAAATTCAATTTCAAGTCAGATTACAAAGTATTAGTTATTTACGAGATTGACAAAGCGGCTGACAACATTCAACACATGATCAAATGGATCATAGATCGCTATTCTGATGTATGCAAACTCATAGTTTGTTGCGAAGATGATGCCGACATTCTCGAACCTGTGAAAAACCGGTTCGAAGTTATTAATATTGATGCTCCGCCAACTCATGAAATTATGGATGTTCTTATTCAGATAGCGAAACAAGAAGAGATTGATATGTCCATGAACTTTGCTGCTAAGATTGCCACCAAGTCAAAGCAGAATCTCAGGAAAGCAATCATGGCTCTCGAAGCATGCAGAGCACACAACTATCCATTCTCAGAAGAACAACCAATTCCGCTTGGATGGGAGGAGACTATAATAGAAGTTTCTGCAGAGATCCTAGTGGATCCTTCACATTCACGATTATTCTCAATCAGAGGGAAATTACAGAAGCTTCTGGTGGATTTTGTTCAACCCAAGCTGATTCTCCGGAAACTGGTGGAACAGCTCCTAAAAGGAATTGACAGCAACTTAAAAAGGGAGCTCTTCTACTGGCATGCTTATTATAACAAGAGACTCCCACCGGGAACTACAGCTTTACTAAAATTAGAAGAATTTGTGGCCAAGTTCATGAGCATATACAGAAAAAGCTCTAGCGGCCCTTCGAGAAGCTTCACACTCTCACCGCATAAGAATCGGAATCCTGTGTCAGTGGTTTGCATCAATATGGCTTACAATGGAGAAGCAAGCTCAAGGAGCTCGGGATTTTCTCATATCTCGCTCAATGAAAGAATACTTTCTTCAATGTCGCGGAGAACTGTTGCTGCTCACCCATGGCATGACTTAGAGATTGGACCTGGAGCTCCATCAGTTTTCAACTGTGTTGTTGAAATTAGCAAAGGCAGCAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGGTTGATCGTATTCTTTACTCATCAGTTGTCTACCCACACAATTATGGTTTCATTCCAAGAACCATTTGTGAAGACAGTGATCCTATGGATGTCTTGATACTAATGCAGGAGCCTGTGCTACCTGGTTCTTTCCTTCGTGCTCGTGCTATTGGATTGATGCCAATGATTGACCAGGGAGAAAAGGATGACAAAATCATAGCAGTTTGTGCTGATGACCCTGAATTCCGCCATTACCAGGACATCAAGGAACTTCCTCCACATCGGCTGGCTGAAATCAGGCGATTTTTTGAGGACTACAAGAAAAACGAGAACAAAAAGGTTGACGTTGAAGATTTTCTTCCTGCTGAGGCTGCTGTGAATGCCATCAACTATTCCATGGACCTATACGCTGCTTATATAGTTGAAAGCTTGAGGCAGTGA 2883 0.4332 MENSPPNGKFPPRNPNSRFSAKEGRSGYEPSDTETEWQEVPRHERERKDLTLGPEEAKVLNFRNNKSPMALHRRHPSKFELEISSPAPSSVASSARRRPQSRSPYRPFRADDEALNPIPGLTNPDLGRHASPYQPERENLNWRAANRVGEKPNQRRAMTAPRQRGRERETSHGINPSIGEINEKVAEANFSRDPVNDELIITSTESSFAGDIFFSREYNAMIKQKTLLTKPNIDVETQFNSSKPKVLPPMGTPYHQHHHHHPNRGNGRLNNVNIQGTSSSTTMLSRSSTISSSDAKSKKNSGNLSSSSSMKSDVSWTSASIQRFIMNRKKNHADAWFACMRKVGRTSNKSPEHRSVDEASIIEKAFVLQSLPQFWADKHQPTSLDGFICHQQEAQLLKELASQDVCPHILLKGPIGSGKRALSMALLREIFGDATSNLSHDLRNFTIQERRPVKITVPITSSSHHMELNVNLEPNAKYALMGLVKEISTEYAITPEVSKFNFKSDYKVLVIYEIDKAADNIQHMIKWIIDRYSDVCKLIVCCEDDADILEPVKNRFEVINIDAPPTHEIMDVLIQIAKQEEIDMSMNFAAKIATKSKQNLRKAIMALEACRAHNYPFSEEQPIPLGWEETIIEVSAEILVDPSHSRLFSIRGKLQKLLVDFVQPKLILRKLVEQLLKGIDSNLKRELFYWHAYYNKRLPPGTTALLKLEEFVAKFMSIYRKSSSGPSRSFTLSPHKNRNPVSVVCINMAYNGEASSRSSGFSHISLNERILSSMSRRTVAAHPWHDLEIGPGAPSVFNCVVEISKGSKVKYELDKTSGLIKVDRILYSSVVYPHNYGFIPRTICEDSDPMDVLILMQEPVLPGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYQDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAVNAINYSMDLYAAYIVESLRQ 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0162 960 CDD AAA 391 446 - -
Lele50g0162 960 Gene3D - 373 564 IPR027417 -
Lele50g0162 960 SUPERFAMILY post-AAA+ oligomerization domain-like 625 719 IPR008921 GO:0003677|GO:0006260
Lele50g0162 960 MobiDBLite consensus disorder prediction 25 54 - -
Lele50g0162 960 Hamap Inorganic pyrophosphatase [ppa]. 795 951 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lele50g0162 960 SUPERFAMILY Inorganic pyrophosphatase 777 955 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lele50g0162 960 Gene3D - 626 719 - -
Lele50g0162 960 Pfam Inorganic pyrophosphatase 799 950 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lele50g0162 960 Gene3D Inorganic pyrophosphatase 778 956 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lele50g0162 960 MobiDBLite consensus disorder prediction 266 311 - -
Lele50g0162 960 FunFam Soluble inorganic pyrophosphatase 4 778 956 - -
Lele50g0162 960 ProSitePatterns Inorganic pyrophosphatase signature. 846 852 - -
Lele50g0162 960 CDD pyrophosphatase 796 948 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lele50g0162 960 MobiDBLite consensus disorder prediction 240 311 - -
Lele50g0162 960 MobiDBLite consensus disorder prediction 83 100 - -
Lele50g0162 960 Gene3D - 566 623 - -
Lele50g0162 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 612 IPR027417 -
Lele50g0162 960 MobiDBLite consensus disorder prediction 1 176 - -
Lele50g0162 960 FunFam replication factor C subunit 3 565 623 - -
Lele50g0162 960 PANTHER INORGANIC PYROPHOSPHATASE 745 960 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lele50g0162 960 FunFam Replication factor C subunit 3 373 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0162 Lele-ChrLele50 961701 968920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0162 374 720 Core DNA Replication Machinery Family AT5G27740 40.115 8.73e-84 272