Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0148 ATGTTTTCCGCCAGAGACATGCCTTCTCCATCCTCAATCTTCTCGGCTTATGCCTCCATGACTGCCTCCATCATGCTTTTTCGTTCCATGGCCAACGAACTCATACCTCATCCTCTTCGAGGTTATCTCCTTAACGCTTTTCGCTATTTCTTCAAGCCTCACTCCCCTGTTCTCACTCTCCTCATCGAAGAATCCAACGGAATTTCTCGCAACCAAGTCTTCGATGCTGCAGAAGTTTACTTATCCGCCAGAGTTAGTCCCCAAAACAACAGGCTCAAGATCAGCAAGAGTCCCAAAGAGAAGAACTTGATGGTGCGGATAGTAAAGGGTGAGAAGCTGGTGGATTGGCATAATGGGGTTGAGCTCAAGTGGAGATTCAACTCTGCAGAGCCAGAGAACAGCAACCCCAATGATCCACACAACTTGTCAGGTAGATCGGAAAGGCGACACTTCGAGTTGAGTTTCCACAAGAAGCACAAGGAGATGGTGTTAAATTCTTATCTTCCGTTGGTCCTCGAGAAAGCCAAGGTCATGAGAGACGAGGAAAGGATACTGAAGATGCATACCTTAAACACCACCTACGGTTATTCGGCGGTCAAGTGGGATTCTGTGAATCTCGAACACCCATCGACCTTTGAGACTCTGGCTATGGACCCAGAGCTGAAGAATGGGTTGATGGAGGACCTGAATAGGTTTGTCAAGAGGAAGGACTTTTACAAGAAAGTTGGGAGGGCGTGGAAACGAGGGTACTTGCTGTATGGGCCTCCGGGTACTGGGAAATCGAGCCTGATTGCAGCCATGGCTAATTACTTGAAGTTTGATATCTTTGACCTTCAACTTGAAAATATCAAGAGAGATTCGGACCTCAGAAAGCTGCTTCTTGCCACTGCTAATAGGTCCATTCTCGTGATCGAAGACATAGATTGTAGCGTGGATCTGCCGGAGCGCCGCGAAGCAGAAGGACGTAATAATAATAAAACTGAAAAGAATAAGAACGCCGACGCACGGCAGCTGACGTTGTCTGGGTTACTGAACTTCATAGATGGGCTCTGGTCAAGTTGTGGAGACGAGAGGATTATAGTCTTCACAACCAACCACAAGGAAAAACTAGACCCGGCTCTGTTACGTCCAGGAAGAATGGACATGCATATTCACATGTCCTACTGCTCCTACCATGGCTTCAAGCTTTTGGCCTCAAATTACTTGGGAATTTCCAGTGACCAGCACCAGAATCTGTTTACAGAAATAGAAGTACTCATAGAGGACACTCACATAACCCCTGCTCAAGTAGCAGAGGAGCTCATGAAGACCGAAGACGCTAAAGACGCTCTTGAAGGCTTCGTGAGTCTGCTTAAGCGCAAGAAGATGGAAGGCGACGTGTCTGAGAATGATGAATCAGAGAAACCATTGATTCGAGAAACCAAAAGGAGAAGAGTTAATTGCAAACAGGGGAAAACTGTGGGAGTGGGCAAGAGGAATAGTGGGAGTACCCCAAGGAGGACGAGAAGGGGAACTAGCTTTGTAAAAAACTACACAGCTAGATGA 1545 0.4699 MFSARDMPSPSSIFSAYASMTASIMLFRSMANELIPHPLRGYLLNAFRYFFKPHSPVLTLLIEESNGISRNQVFDAAEVYLSARVSPQNNRLKISKSPKEKNLMVRIVKGEKLVDWHNGVELKWRFNSAEPENSNPNDPHNLSGRSERRHFELSFHKKHKEMVLNSYLPLVLEKAKVMRDEERILKMHTLNTTYGYSAVKWDSVNLEHPSTFETLAMDPELKNGLMEDLNRFVKRKDFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLENIKRDSDLRKLLLATANRSILVIEDIDCSVDLPERREAEGRNNNKTEKNKNADARQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIHMSYCSYHGFKLLASNYLGISSDQHQNLFTEIEVLIEDTHITPAQVAEELMKTEDAKDALEGFVSLLKRKKMEGDVSENDESEKPLIRETKRRRVNCKQGKTVGVGKRNSGSTPRRTRRGTSFVKNYTAR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0148 514 FunFam AAA-ATPase ASD, mitochondrial 202 384 - -
Lele50g0148 514 Coils Coil 316 336 - -
Lele50g0148 514 SMART AAA_5 246 390 IPR003593 -
Lele50g0148 514 MobiDBLite consensus disorder prediction 487 514 - -
Lele50g0148 514 MobiDBLite consensus disorder prediction 458 514 - -
Lele50g0148 514 CDD AAA 247 388 - -
Lele50g0148 514 Gene3D - 198 384 IPR027417 -
Lele50g0148 514 MobiDBLite consensus disorder prediction 458 477 - -
Lele50g0148 514 Pfam Domain associated at C-terminal with AAA 35 126 IPR025753 -
Lele50g0148 514 ProSitePatterns AAA-protein family signature. 358 376 IPR003960 GO:0005524|GO:0016887
Lele50g0148 514 Pfam ATPase family associated with various cellular activities (AAA) 251 387 IPR003959 GO:0005524|GO:0016887
Lele50g0148 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 439 IPR027417 -
Lele50g0148 514 Gene3D - 385 458 - -
Lele50g0148 514 PANTHER BCS1 AAA-TYPE ATPASE 15 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0148 Lele-ChrLele50 893750 895863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0148 204 386 Calmodulin-binding Proteins AT3G56690 28.125 4.19e-12 67.0