Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0140 ATGGCGGGTTTATTCTCACTAGGCGGTGGAGGAGGAGCAGTTAGGGGAGGAGGAGGTAGCAACCAGGACGACGAACCCCACCACAATAACCCACCCACGGGAGTTCCTCATCCAGACGCCTTCTTCTGGTACAAGAATAATGAAGACGTGTCTTATTACAGAGGCTTCGAGCTATGGAACCAGCAGCAGCTGCAGCAGCAGGTCATGCCTCCTCAAGCGAGGCCGCTTCTCCATCAAGATCTTTACTCCCTAGGGGTGGGGCCGAGCAGCAGGAGCTCCGATGATCAGTCGTCGTCGAGATCGGGCGTCATGATGATGCGTTCCGGCGGCGGGAGCAGCAGCGCCGGAGGAATAAGCTGCCAAGACTGTGGGAACCAGGCGAAGAAGGACTGCCCACACATGAGGTGCAGGACTTGCTGTAAGAGCCGTGGCTACGACTGCCAGACGCATGTGAAGAGCACTTGGGTTCCGGCCGCCAAGCGCCGCGAGCGACAGCAGCAGCAGCAACTTCAGCTTCGAGCGGCAGACAACAATCCCAAGAGGCTGAGAGATACTTGTAATAATAACCCCAGCCCCTCCACTCATGTGCAAATGCCAACCCATTCTTCTTCAGCAGAAGGGTTAGAGCATGGGAATTTTCCAGCGGTGGTTAGTTCCTCGGCGGAGTTCCGGTGCGTACGGGTTAGCTCCATGGACGAGTCTGACGAGCAATACGCATACCAGACGGCCGTGAACATCGGAGGCCATGTATTCAGAGGAGTTCTCTATGACCAAGGCCCCGATCCCATTTATATGTCCACAGCTGATACATCTCCCGGTGGAGCCGTTCAGCCCCTCAATCTCATTGCCGCCACCGGCGCTTCTGCTCTTCCCACTGCCGCCGCCGGGGCTTCCTCCACTGGGCCGCTGCTTAATCCTTCCTTGTACGCAGCGCCCGTTAACCCTTTCATGTCTGGCAGTGGTACGCAGTTCTTTCCTCACCCAAGATCTTGA 993 0.57 MAGLFSLGGGGGAVRGGGGSNQDDEPHHNNPPTGVPHPDAFFWYKNNEDVSYYRGFELWNQQQLQQQVMPPQARPLLHQDLYSLGVGPSSRSSDDQSSSRSGVMMMRSGGGSSSAGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPAAKRRERQQQQQLQLRAADNNPKRLRDTCNNNPSPSTHVQMPTHSSSAEGLEHGNFPAVVSSSAEFRCVRVSSMDESDEQYAYQTAVNIGGHVFRGVLYDQGPDPIYMSTADTSPGGAVQPLNLIAATGASALPTAAAGASSTGPLLNPSLYAAPVNPFMSGSGTQFFPHPRS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0140 330 MobiDBLite consensus disorder prediction 83 117 - -
Lele50g0140 330 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 119 161 IPR006510 -
Lele50g0140 330 MobiDBLite consensus disorder prediction 159 206 - -
Lele50g0140 330 MobiDBLite consensus disorder prediction 85 117 - -
Lele50g0140 330 MobiDBLite consensus disorder prediction 160 206 - -
Lele50g0140 330 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 213 260 IPR006511 -
Lele50g0140 330 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 314 IPR007818 GO:0003700|GO:0006355
Lele50g0140 330 MobiDBLite consensus disorder prediction 1 38 - -
Lele50g0140 330 Pfam Domain of unknown function (DUF702) 117 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0140 Lele-ChrLele50 843276 844780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0140 1 319 C2H2 Transcription Factor Family AT5G66350 46.939 1.80e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele50g0140 DUF702 1.8e-62 No_clan