Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0128 ATGACCAGCTCTTCCGCTGTTTCTCGCAAGGCTCTGAGTAAGATTGCCTGCAATAGGCTTCAGAAGGAACTCGTGGAGTGGCAGGTCAATCCCCCCACCGGTTTCAAGCACAAAGTCACCGATAATCTCCAAAGGTGGGTTATTGAAGTGACTGGAGCTCCGGGTACACTTTACGCCAATGAAACCTACCAACTTCAGGTAGACTTTCCCGAGCACTACCCCATGGAAGCTCCACAGGTTATATTTTTGCACCCCGCTCCACTACATCCCCATATCTATAGCAATGGGCACATTTGTTTAGATATACTGTATGACTCATGGTCCCCGGCCATGACAGTTAGTTCCATCTGCATCAGCATTCTCTCAATGCTTTCAAGCTCGACTGTGAAGCAACGCCCTGAGGATGATGACCGCTATGTAAAGAACTGCAGAAACGGTAGATCTCCTAAGGAGACAAGGTGGTGGTTCCATGACGATAAAGTATAA 486 0.4815 MTSSSAVSRKALSKIACNRLQKELVEWQVNPPTGFKHKVTDNLQRWVIEVTGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTVKQRPEDDDRYVKNCRNGRSPKETRWWFHDDKV 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0128 161 SMART ubc_7 18 161 - -
Lele50g0128 161 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 15 161 IPR000608 -
Lele50g0128 161 SUPERFAMILY UBC-like 6 126 IPR016135 -
Lele50g0128 161 FunFam probable ubiquitin-conjugating enzyme E2 16 13 161 - -
Lele50g0128 161 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 103 IPR023313 -
Lele50g0128 161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 15 137 - -
Lele50g0128 161 Gene3D Ubiquitin Conjugating Enzyme 15 161 IPR016135 -
Lele50g0128 161 Pfam Ubiquitin-conjugating enzyme 19 154 IPR000608 -
Lele50g0128 161 CDD UBCc 17 117 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0128 Lele-ChrLele50 783338 785853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0128 1 112 Miscellaneous Gene Families AT2G33770 26.087 2.73e-07 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0128 50 783338 785853 Lele52g0133 52 779689 783927 hybridization