Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0122 ATGGATAAGCCTCACCACCTCCTGCAGGCTTCCCCCATGGACAAGCCCTCTCTTCCCGATGCTCAAAGACCCACCTTTGACCGTTCTGACCAGACTCTCCCCCTGATGACCGTCGATCCCTGCCGGACTGCCGGGGATGCCCAGGATTCCCAGCTCCTCCCCGCCCCGGTCCCACTTGCCCGCGATGCTGATGTGGGCTCGGCGCAGCATGGTTGCTTGCCCGACATGGAACTCAAGGCTGACGTGAGGGTTGCGGACGGCAGCTCGGGGAAAAGGAAGCGAGGTCGGCCGGCCAGGGGTACTGCCAGGGAACCGCCATTGAAGAAGAATAAGGACGAGGAGGATGTCTGTTTCATTTGTTTCGATGGTGGCAGCCTTGTTCTCTGTGATCGCCGGGGTTGTCCTAAAGCATACCATCCCGCATGTATTAAGCGAGACGAGGCATTCTTCCGTTCCAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCGGTTGTCGGCGGGCATCCCACTATATGTGCTATACGTGTACATATTCTTTGTGCAAGGGTTGTATAAAAGGCGCTGATTATCTGTGTGTCAGAGGGAATAAAGGTCTGTGCGGGATATGCATGAGGACTATAATGCTCATTGAGAACAGTGCGCAGGGAAACAAGGAAATGTGTGAAGTGGATTTTGACGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGTTGTACTTGAAAGAGAAGCTATCTTTAACATTAGATGAGATCCTTCGAGCTAAAACTCCATGGAAAGGAGCTGCTGCTAATGGTTCTAAGTTAGAAATGCCTCATGAAATTCATATCCATAAAGATGACAAGGGTTCCGGGTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTAGAAAATAACCATTGTAATAGACAGCCAAGGCTTCTGAATAAGGAGGACTGCCCAAATATAAACACTTCAGCTGGTGATAAAGATGCATCTATGGCTGAACGCACAAAATGGGCATCGAAGGAGCTTTTAGAGTTTGTTGCACATATGAAAAATGGTGATGCATCTCTCCTATCTCAACGTGATGTTGAGGCTCTTTTGGTGGAGTATATAAAGAAAAACAATCTTTATGATCCTCAACAGAAGAGCCAAGTTGTTTGTGATTCAAGGCTAGTCAATTTGTTCAGAAAAGAGCGTGTAGGTCAGATTGAAATGTCAAAGCTTCTTGAATCCCATCTTCTTATGAAAGATGATGCCTCTGCCAATATTATTAGGTCAGGACCAATTGATGATGTTGCTAGTCAGATGGAGGTTAATGTCAATGATAATAAACATAAAACACGTAGAAGGGCTGAAGGGCTGCTTGATAATCCGGACGCATATGCTGCAATAAATGCTCACAACATTAACTTGATTTACTTGCGGCGTAATCAGATGGAGAATATAATTGAAGATGCTGAGAACTTCAAGGACAAGGTTGTTGGTTCAATTGTGCGGATAAGAATCTCCAGCAGTGATCAAAAGCAAGAGATGTATAGGCTTGTACATGTTATAGGTACCAGCAATATTGCTGAATCTTACAATATTGGCTCACGAACAACAGGCATTGTGCTTGAAATTTCTAATTTAAACAAGAAAGAGGTCATAAAGATAAGTGAGATTTCGGAACAGGCTTTCTCTGAGGATGAATGCAAACGGTTGCGCCAGAGCATAAAATATGGGTTTTCAAAAAGATTGACTGTGGTTACTATTATTTTAGGACTTCTGAGCAGGCATGTAAGGCTAGCTGTTCAGAAGATTATAGCTGTTCCTTTGTTGAGCCAGTTACTGAACTCACCTGAGGAACGACAGCAAAGGCTGCAAGAAATTCCAAAAGTATACTCTGATCCAAATATGGATTCAATGTTTGACTCTGATGAAGATGCTGAAAAGCCAGATGAAAGGAAGCAAGATGACAATATACAGTCCAAAAACTATGGATTTAATAGAAGAGAGAGGGAGCCTAGTTCTCCAAGAAGTCAGGATGGTGTCCTAAATGATGTCGGATGCAGAGCACTAGACTTTTTGGTCACTGCCCATGAGCAGATTGAGAATACAAGTACAATGAAGAACCAGAACAGTCCAAATGATGCAGCAAATGGTGCTAGCAATAATTTAGTAGTGGCAACGTCAGGGACATCTTGTGTTGTGGCAGACCCTCCATCGTTGCCTCTCTCTACAGGAAAGGAGCAGCCATTTAATGATCTTGCAACTGATAATCTATGGCACTATTGGGATCCATCTGGGAAGATTGAAGGACCATTTTCTTTGCTGATGTTGTGTAAATGGAATGCAAGCGGGCTTTTCCCTCCTGATCTCAGAATATGGAAGAACACTGAAAACCAAGATGACTCTATATTGTTAACTGATGTATTAAGTGGGAAGTGTACTGAAAGTGCGTCATTGCCATGCAATAGCCAGCTACTATCTTTAGGGATCAGAGCTGCACAGGGTGACGAAGATGATATTGATTTGCCAAGTTGCGCTCCTGTAACCAGTTCCTCAACTTGCATAGATTCTACATCTACTATTGTTCCTGCAACAAAAACATCGCCAAAAAACTCACAAATTGGTTTTCTGGAATTGCCTGGTCACTCTAAGCCAACTCATTCTGAACATACGGGTCAGTCCGCTGAAAATAAACATTCCTGGAGTACTGCTTCCAGCTTAGTTGGTGGTGGGACATCACTTCCTGAAGTGACTGTTGAGTGGAGAACATGTTCACCAGCTCCACCTAATCCTTCTGTTGAGGAATGGGACTCCAATCTTGTCTCTGCATCTTCATTGAAGCCGGCTGAAACTGTTGGCGATTGTACTGCTACTCCATCTTCAATATGCGATCAACTGAAACATTCTTCCCCATCCAATCCAGCCTGTAATACAACTACGTGGCAGGCAATTATTGATGAACAGAATGATTTTGGCTCATTTGATGAAACAGTTTCAGATTTGTTGGCAGAAATGGAGGCAATGGGGTCTCTTGGTGGCTTGGAATCTCCCACATCGATCATGAAATGTGGTGAGGAATTGACTGAGGGTTCTAATTGTCTCAGCCCTACAGAAGGGCTTAGCCCAATGCCTGATGCTGGTAAAGGCGATGCACTGAGCTCCACGGGAGATTTACAATTTCCCTCCCAATCCACAGCACCTGAGGTACCATTATGCCAGCCAGATGTACATTACCATCAAAGAATCTCTGGAGGGCATTCTGGCAGAAGTTCTGAAGTAGCTGGCACGAAAAATAGTGTTTCAGGTAATCAATGGAAGTCAGGTTCAGGTATTCCATCCACAGCAACCTGGGCCATACCTACAGATACTGCTTGGAGACTCGGGCAAGACAGCAGAAGTGGTTGGGAGGCATCTCAGGTTAATATGAACTTGGGCTGGAGTGGAATGGATAATAAAGGAAATGCAAACGCAAGTTGGGGAGTAGGACAGGGGACAGTGCAGGAAAACAGGAATATAAATTCATACACTTCCGTAGGAACTCCAGGCGTTTACGGGAGCCAATCTAGATACGGCAGCGATCGATTTTCTCCTCGTGGTAGGGATATGAATTCTGGTAGGGGTAGACACGTCTGGAACAGGCAACCATTTGGTGGGGGAAATGGAGGATCCCAGAGGCCTGCGCCCAGAGGGCAGCGAATTTGTAAATTTTACGAAAGTGGGAAATTAGAGGGCGAAGGTGTGTCCTCAAAACAAGCCGAGGAAATAACTGCTGCCATAACTGAAGTTTTGAATGACAGTCGTGAAAATGAATCAGAGTCATTTGTATCTAAAGGAGAAATGGAGAAACCAAGCTATCCAAGTTTAAATCAGAAGTGCAGAGCTCTCAGATATGAGATAGATAAAGTCACTGCCGGGCAGAGGTTGGATTTGAACCTTGAGAAGGGGTAA 3933 0.4465 MDKPHHLLQASPMDKPSLPDAQRPTFDRSDQTLPLMTVDPCRTAGDAQDSQLLPAPVPLARDADVGSAQHGCLPDMELKADVRVADGSSGKRKRGRPARGTAREPPLKKNKDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSGCRRASHYMCYTCTYSLCKGCIKGADYLCVRGNKGLCGICMRTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWLYLKEKLSLTLDEILRAKTPWKGAAANGSKLEMPHEIHIHKDDKGSGSENSCIDIESNNLENNHCNRQPRLLNKEDCPNINTSAGDKDASMAERTKWASKELLEFVAHMKNGDASLLSQRDVEALLVEYIKKNNLYDPQQKSQVVCDSRLVNLFRKERVGQIEMSKLLESHLLMKDDASANIIRSGPIDDVASQMEVNVNDNKHKTRRRAEGLLDNPDAYAAINAHNINLIYLRRNQMENIIEDAENFKDKVVGSIVRIRISSSDQKQEMYRLVHVIGTSNIAESYNIGSRTTGIVLEISNLNKKEVIKISEISEQAFSEDECKRLRQSIKYGFSKRLTVVTIILGLLSRHVRLAVQKIIAVPLLSQLLNSPEERQQRLQEIPKVYSDPNMDSMFDSDEDAEKPDERKQDDNIQSKNYGFNRREREPSSPRSQDGVLNDVGCRALDFLVTAHEQIENTSTMKNQNSPNDAANGASNNLVVATSGTSCVVADPPSLPLSTGKEQPFNDLATDNLWHYWDPSGKIEGPFSLLMLCKWNASGLFPPDLRIWKNTENQDDSILLTDVLSGKCTESASLPCNSQLLSLGIRAAQGDEDDIDLPSCAPVTSSSTCIDSTSTIVPATKTSPKNSQIGFLELPGHSKPTHSEHTGQSAENKHSWSTASSLVGGGTSLPEVTVEWRTCSPAPPNPSVEEWDSNLVSASSLKPAETVGDCTATPSSICDQLKHSSPSNPACNTTTWQAIIDEQNDFGSFDETVSDLLAEMEAMGSLGGLESPTSIMKCGEELTEGSNCLSPTEGLSPMPDAGKGDALSSTGDLQFPSQSTAPEVPLCQPDVHYHQRISGGHSGRSSEVAGTKNSVSGNQWKSGSGIPSTATWAIPTDTAWRLGQDSRSGWEASQVNMNLGWSGMDNKGNANASWGVGQGTVQENRNINSYTSVGTPGVYGSQSRYGSDRFSPRGRDMNSGRGRHVWNRQPFGGGNGGSQRPAPRGQRICKFYESGKLEGEGVSSKQAEEITAAITEVLNDSRENESESFVSKGEMEKPSYPSLNQKCRALRYEIDKVTAGQRLDLNLEKG 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0122 1310 SMART gyf_5 752 807 IPR003169 GO:0005515
Lele50g0122 1310 Gene3D - 1235 1299 - -
Lele50g0122 1310 ProSiteProfiles Plus3 domain profile. 462 595 IPR004343 GO:0003677
Lele50g0122 1310 CDD SWIB-MDM2_like 337 412 - -
Lele50g0122 1310 MobiDBLite consensus disorder prediction 1 55 - -
Lele50g0122 1310 MobiDBLite consensus disorder prediction 873 904 - -
Lele50g0122 1310 ProSiteProfiles SWIB/MDM2 domain profile. 331 414 IPR003121 -
Lele50g0122 1310 MobiDBLite consensus disorder prediction 83 108 - -
Lele50g0122 1310 Gene3D SWIB/MDM2 domain 323 421 IPR036885 -
Lele50g0122 1310 Pfam GYF domain 754 794 IPR003169 GO:0005515
Lele50g0122 1310 SMART swib_2 332 417 IPR019835 -
Lele50g0122 1310 MobiDBLite consensus disorder prediction 621 677 - -
Lele50g0122 1310 CDD PHD5_NSD 116 161 - -
Lele50g0122 1310 SUPERFAMILY Plus3-like 463 582 IPR036128 GO:0003677
Lele50g0122 1310 MobiDBLite consensus disorder prediction 890 904 - -
Lele50g0122 1310 MobiDBLite consensus disorder prediction 1172 1188 - -
Lele50g0122 1310 MobiDBLite consensus disorder prediction 636 670 - -
Lele50g0122 1310 SMART PHD_3 116 162 IPR001965 -
Lele50g0122 1310 MobiDBLite consensus disorder prediction 1079 1111 - -
Lele50g0122 1310 MobiDBLite consensus disorder prediction 1172 1224 - -
Lele50g0122 1310 Pfam Plus-3 domain 467 570 IPR004343 GO:0003677
Lele50g0122 1310 Gene3D - 753 809 IPR035445 -
Lele50g0122 1310 MobiDBLite consensus disorder prediction 1261 1281 - -
Lele50g0122 1310 FunFam Zinc finger CCCH domain-containing protein 19 106 206 - -
Lele50g0122 1310 SUPERFAMILY SWIB/MDM2 domain 335 413 IPR036885 -
Lele50g0122 1310 SMART rtf1 462 572 IPR004343 GO:0003677
Lele50g0122 1310 SUPERFAMILY GYF domain 750 804 IPR035445 -
Lele50g0122 1310 ProSitePatterns Zinc finger PHD-type signature. 117 177 IPR019786 -
Lele50g0122 1310 ProSiteProfiles GYF domain profile. 751 805 IPR003169 GO:0005515
Lele50g0122 1310 MobiDBLite consensus disorder prediction 1024 1060 - -
Lele50g0122 1310 Pfam SWIB/MDM2 domain 339 412 IPR003121 -
Lele50g0122 1310 MobiDBLite consensus disorder prediction 1074 1111 - -
Lele50g0122 1310 SUPERFAMILY FYVE/PHD zinc finger 112 161 IPR011011 -
Lele50g0122 1310 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 30 583 - -
Lele50g0122 1310 Gene3D - 463 584 IPR036128 GO:0003677
Lele50g0122 1310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 204 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0122 Lele-ChrLele50 738927 747040 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele50g0122 Plus-3 7.8e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0122 50 738927 747040 Lele56g1414 56 17185946 17192942 CCT
Lele50g0122 50 738927 747040 Lele51g0118 51 683229 689267 hybridization
Lele50g0122 50 738927 747040 Lele52g0125 52 732276 738278 hybridization