Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0117 ATGCCTCCTCTTCTCTTTCTACTACTGGTGCTCTGCGCACCGTTCCTAACGTGCGCAGACCGAAGCAGCGTCGCCATTGCTGAGATCGGAGCCCTCTCGTCCTTCAGGCTCAACCTTCAGGATCCTCTCGGAGCTCTCGACGGTTGGGATCCTTCCACGCCGGCCGCTCCTTGCGACTGGCGCGGAGTTGCTTGTTACAACAACAGGGTCACCGAGTTGCGCTTGCCGAGGCTTCAACTCAGTGGCCGGCTTACTGACCGTCTTTCCGACTTGCACATGTTGCGCAAGCTCAGCCTTCGCTCTAACTCCTTCAATGGCACCATCCCTTCGTCGCTTGGTAAATGTGCCTTCCTGCGCGCCGTGTTTCTCCAGTACAACTCACTCTCCGGTGTTCTTCCGCCGGAGTTCCGAAACATCACTGGCCTTCAGATTCTTAATGTCGCGCAGAACCGTCTCTCCGGCAGACTACCCGGCGACCTCCCGTTGAGCCTGAAGTACGTCGACCTCTCATCGAACTCGTTTTCTGGCGAGATTCCGAGTGCCATTGCCAACCTTTCTCAGCTTCAGCTCATCAACCTGTCGTACAACCAGTTCTCGGGAGAGATTCCGGCGAGCTTTGGACAGCTTCAGCAGCTCGAATACCTCTGGCTTGATGACAATCTTCTCGGAGGAACTCTCCCTTCGGCACTCGCTAACTGTTCTTCCCTCGTGCATCTCAGCGTAGAAGGAAATGCGCTTGGAGGAGTGATTCCGGCGGCCATTGCAGCTCTTCCGAGGCTTCAGGTGATATCTCTCTCTCAGAATAATCTCACCGGATCGATCCCGGCTTCCATTTTCTGCAACATTTCTGTCTACACGCCGTCGCTTCGAATCGTTCAGTTAGGATTTAATGGTTTCACGGATATTGTCGAGCCTCGGGCATCAACGTGTTTCAGTGTTCTTCGGGTTTTGGACATTCAGCACAATAGCATACACGGCACGCTTCCCTTGTGGATAACGAAAATGTCCACGTTAACAATGCTTGATGTGTCGAGTAATGCATTTTCTGGCGAGATTCCATCAGAAATCGGAAACCTCGCGAAATTGGAGGAGTTAAGGATGGCCAACAATTCATTTACTGGGATGATTCCGGAGGAAATCAAGAAATGTGCTTTCCTGCGTGTTGTTGATTTTGAAGGCAACCGGTTTACCGGAGAAGTTCCTTCGTTCTTTGGTTATATGTCGGGTCTGAAGGTGCTGTCCCTTGGTGGGAATCTTTTCTCTGGTTCAGTTCCGGAGAGTTTTGGTAACCTTTCGGCGCTGGAAACACTGAGTTTGAGAGGTAATAACTTGAATGGAACCATGCCTGAGGAAGTCATGGGATTGAGCAATATTTCAAGTCTTGATCTTAGCGGAAATAAATTTACGGGTCAGATATCTTCAAGCATTGGGAACCTGAGCCGATTGATGCTTCTCAATCTGAGTGGCAACGACTTTTCTGGAAAATTCCCTGCGAGTTTGGGGAACCTTTTCAGGCTAAGTACACTTGACTTGAGCAAACAGAATCTTTCTGGGGAGTTACCATTTGAGCTTTCAGGTTTGCCGAATCTGCAGGTTATTGCTCTGCAGGAGAACAGATTATCTGGGGACGTTCCTGAAGGGTTTAGCAGTTTGATGAGTTTGCGATATGTAAACCTGAGCTCTAATGCGTTCTCGGGACATATTCCTCAAAATTATGGCTTTCTTCGATCACTGGTTGCTCTTTCTTTGTCTGACAACCACATTACAGGAGTAATTCCTTCGGAGATCGGAAACTGCACTGATATTGAGATTCTTGAGCTTGGTTCAAATTCTTTGACAGGTCACATCCCAACTGATCTCACTCGACTCGCCCATTTGAGAGAGCTTGATTTGAGTAGAAACAAATTAACCGGAGATATACCCGGTGATATCTCCAAATGTTCGTCCTTAAATGCTCTGCTGGTGGATCACAATCGTCTTTCAGGCACAATGCCGGATTCACTGGCTGAGCTATCAAACCTGACAATGCTGGATCTCTCTGCTAACAACTTGAGCGGGGAAATATCGAGTAATATTTCCATGATGCCTAATCTAGTGTCCTTCAATGTCTCTGGAAATAAATTGGAAGGTGAAATACCTCCAACCTTGGGTGCTCGATTCAATAATGCCTCTGCATTTGCGGATAATCAGAACTTATGTGGGAAGCCATTGGATAGGAAGTGTGAAAACGTAGTTGATAGGGACAGGAAGAGGTTGATTGTGTTGATTGTTGTAGTTGTTGCCGGAGCTTGCTTACTATCATTGTGTTGCTGCTTCTACATATACAGCCTTTTGCGGTGGCGGAAAAGGCTCAAGGAACGGGCGTCTGGGGAGAAAAAAAGGAGTCCTGCTAGGGCGAGTTCTGGAGCAAGTGGAGATCGAAGCAGTACTGACAATGGTGGACCAAAACTGGTCATGTTTAATACCAAAATTACACTTGCTGATACCATGGAAGCGACTAGGCAGTTTGACGAAGAAAATGTGCTGAGCAGAACAAGGTATGGACTGGTATTCAAGGCCTGCTACAACGACGGAATGGTGCTTTCAATTCGCAGACTCCAAGATGGATCATTGGACGAAAATATGTTCAGGAAAGAAGCAGAATCACTAGGGAAAGTGAAGCACCGAAATTTAACCGTTCTTAGAGGTTACTATGCCGGGCCACCTGACATGAGGCTTCTGGTCTACGATTACATGCCCAATGGAAACCTTGCAACCCTTCTCCAAGAAGCTTCTCATCAGGATGGCCATGTTCTGAATTGGCCAATGCGCCACCTCATCGCACTAGGGATTGCTCGTGGCTTAGCTTTCCTACACCAGTCCTCAATGGTTCATGGGGACGTTAAACCACAAAGTGTCCTGTTCGATGCTGATTTCGAAGCCCATTTGTCAGATTTTGGGCTCGACCGTCTTACAGTAGCCACCCCCGGCGAACCCTCCACTTCAACCTCAGTTGGCACATTGGGTTACGTGTCGCCGGAAGCTATATTAACAGGGGAAGCCACCAAAGAGTCTGATGTGTACAGCTTTGGTATAGTGTTGCTCGAGCTTCTTACAGGAAAGCGACCGGTGATGTTCACACAGGATGAAGATATAGTGAAATGGGTGAAGAAACAACTACAAAGGGGTCAAATTACGGAGTTGTTGGAACCAGGATTGCTTGAGCTCGACCCAGAATCATCCGAGTGGGAAGAGTTCTTGCTGGGTGTGAAAGTAGGCTTGCTCTGCACAGCACCGGACCCTCTCGATCGACCAACCATGTCTGACATTGTGTTCATGCTTGAAGGCTGCCGTGTCGGACCCGACATCCCATCCTCCGCCGATCCCACCTCTCAACCTTCGCCGGCGTGA 3390 0.4873 MPPLLFLLLVLCAPFLTCADRSSVAIAEIGALSSFRLNLQDPLGALDGWDPSTPAAPCDWRGVACYNNRVTELRLPRLQLSGRLTDRLSDLHMLRKLSLRSNSFNGTIPSSLGKCAFLRAVFLQYNSLSGVLPPEFRNITGLQILNVAQNRLSGRLPGDLPLSLKYVDLSSNSFSGEIPSAIANLSQLQLINLSYNQFSGEIPASFGQLQQLEYLWLDDNLLGGTLPSALANCSSLVHLSVEGNALGGVIPAAIAALPRLQVISLSQNNLTGSIPASIFCNISVYTPSLRIVQLGFNGFTDIVEPRASTCFSVLRVLDIQHNSIHGTLPLWITKMSTLTMLDVSSNAFSGEIPSEIGNLAKLEELRMANNSFTGMIPEEIKKCAFLRVVDFEGNRFTGEVPSFFGYMSGLKVLSLGGNLFSGSVPESFGNLSALETLSLRGNNLNGTMPEEVMGLSNISSLDLSGNKFTGQISSSIGNLSRLMLLNLSGNDFSGKFPASLGNLFRLSTLDLSKQNLSGELPFELSGLPNLQVIALQENRLSGDVPEGFSSLMSLRYVNLSSNAFSGHIPQNYGFLRSLVALSLSDNHITGVIPSEIGNCTDIEILELGSNSLTGHIPTDLTRLAHLRELDLSRNKLTGDIPGDISKCSSLNALLVDHNRLSGTMPDSLAELSNLTMLDLSANNLSGEISSNISMMPNLVSFNVSGNKLEGEIPPTLGARFNNASAFADNQNLCGKPLDRKCENVVDRDRKRLIVLIVVVVAGACLLSLCCCFYIYSLLRWRKRLKERASGEKKRSPARASSGASGDRSSTDNGGPKLVMFNTKITLADTMEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLQDGSLDENMFRKEAESLGKVKHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSSMVHGDVKPQSVLFDADFEAHLSDFGLDRLTVATPGEPSTSTSVGTLGYVSPEAILTGEATKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0117 1129 FunFam Uncharacterized protein 257 474 - -
Lele50g0117 1129 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 912 1115 - -
Lele50g0117 1129 Gene3D Ribonuclease Inhibitor 27 160 IPR032675 -
Lele50g0117 1129 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 352 1107 - -
Lele50g0117 1129 SMART LRR_sd22_2 257 284 - -
Lele50g0117 1129 SMART LRR_sd22_2 407 433 - -
Lele50g0117 1129 SMART LRR_sd22_2 455 481 - -
Lele50g0117 1129 SMART LRR_sd22_2 671 694 - -
Lele50g0117 1129 SMART LRR_sd22_2 209 235 - -
Lele50g0117 1129 SMART LRR_sd22_2 335 361 - -
Lele50g0117 1129 SMART LRR_sd22_2 623 652 - -
Lele50g0117 1129 ProSiteProfiles Protein kinase domain profile. 836 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0117 1129 SUPERFAMILY L domain-like 324 714 - -
Lele50g0117 1129 Pfam Leucine rich repeat 314 371 IPR001611 GO:0005515
Lele50g0117 1129 Pfam Leucine rich repeat 163 222 IPR001611 GO:0005515
Lele50g0117 1129 Pfam Leucine rich repeat 576 636 IPR001611 GO:0005515
Lele50g0117 1129 Pfam Leucine rich repeat 409 468 IPR001611 GO:0005515
Lele50g0117 1129 Pfam Leucine rich repeat 505 563 IPR001611 GO:0005515
Lele50g0117 1129 MobiDBLite consensus disorder prediction 801 816 - -
Lele50g0117 1129 Gene3D Ribonuclease Inhibitor 161 249 IPR032675 -
Lele50g0117 1129 SMART LRR_typ_2 257 281 IPR003591 -
Lele50g0117 1129 SMART LRR_typ_2 407 430 IPR003591 -
Lele50g0117 1129 SMART LRR_typ_2 695 719 IPR003591 -
Lele50g0117 1129 SMART LRR_typ_2 185 208 IPR003591 -
Lele50g0117 1129 SMART LRR_typ_2 209 233 IPR003591 -
Lele50g0117 1129 SMART LRR_typ_2 431 455 IPR003591 -
Lele50g0117 1129 SMART LRR_typ_2 359 383 IPR003591 -
Lele50g0117 1129 SMART LRR_typ_2 91 115 IPR003591 -
Lele50g0117 1129 SMART LRR_typ_2 671 694 IPR003591 -
Lele50g0117 1129 SMART LRR_typ_2 575 599 IPR003591 -
Lele50g0117 1129 SMART LRR_typ_2 527 550 IPR003591 -
Lele50g0117 1129 SMART LRR_typ_2 623 647 IPR003591 -
Lele50g0117 1129 Gene3D Ribonuclease Inhibitor 454 744 IPR032675 -
Lele50g0117 1129 ProSiteProfiles Leucine-rich repeat profile. 625 647 IPR001611 GO:0005515
Lele50g0117 1129 PRINTS Leucine-rich repeat signature 626 639 - -
Lele50g0117 1129 PRINTS Leucine-rich repeat signature 671 684 - -
Lele50g0117 1129 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Lele50g0117 1129 SUPERFAMILY L domain-like 35 331 - -
Lele50g0117 1129 Pfam Protein kinase domain 846 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0117 1129 FunFam LRR receptor-like serine/threonine-protein kinase 549 620 - -
Lele50g0117 1129 SUPERFAMILY Protein kinase-like (PK-like) 816 1117 IPR011009 -
Lele50g0117 1129 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 621 741 - -
Lele50g0117 1129 MobiDBLite consensus disorder prediction 789 816 - -
Lele50g0117 1129 Gene3D Ribonuclease Inhibitor 352 453 IPR032675 -
Lele50g0117 1129 Gene3D Ribonuclease Inhibitor 250 351 IPR032675 -
Lele50g0117 1129 FunFam Putative LRR receptor-like serine/threonine-protein kinase 799 911 - -
Lele50g0117 1129 Gene3D Transferase(Phosphotransferase) domain 1 912 1115 - -
Lele50g0117 1129 Gene3D Phosphorylase Kinase; domain 1 806 911 - -
Lele50g0117 1129 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 26 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0117 Lele-ChrLele50 707123 710512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0117 4 1129 Receptor kinase-like Gene Family AT4G36180 69.508 0.0 1524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Lele50g0117 Pkinase 1.6e-33 CL0016