Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0114 ATGTCGTCCGCTGGAGAAGGTGATCGCACCGCCGTTGATCAGCCGGCAGAGGAGCCTAAACAAGGGACCAAGGAGAAGAAGCCTAGGGTTCCAAAGGAGAAGAAGCCAAGGCAGGCGAAAACAGTTTCTCATCCTCCATATTTTCAGATGATTAAGGAGGCTTTATTGGCTATGAACGAGAAGGGTGGCTCCAGCCCCTACGCCATAGCCAAGTACATGGAGGAGAAGCATAAGTCGGTTCTTCCTGGAAATTTCAGGAAGATGTTGGCTCTTCAGCTGAAGAACCAAGCTGCGAGAGGGAAGCTCATCAAGATCAAGGCTTCCTACAAGCTGTCCTCTGTGACCGGCAAGGAGGATAGGGACAGCACTGGCAGGGTCACAAGGTCCACAACACAGAAGACTCAGCGCGCTAAGCGCAGCGCGCCTAAGAAAACAGAGACAGGTAAGAAGGCGAGGAAAAATGTTGGGGTGAAGAAGACGAAGAAATCATCCACATCTACGAAGCCGAAGCAGCCCAAGTCTCTGAGATCTTCATCCAGGAGGGCCAGAAAAGTTACTGCCTCAGCTTCGTGA 573 0.5166 MSSAGEGDRTAVDQPAEEPKQGTKEKKPRVPKEKKPRQAKTVSHPPYFQMIKEALLAMNEKGGSSPYAIAKYMEEKHKSVLPGNFRKMLALQLKNQAARGKLIKIKASYKLSSVTGKEDRDSTGRVTRSTTQKTQRAKRSAPKKTETGKKARKNVGVKKTKKSSTSTKPKQPKSLRSSSRRARKVTASAS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0114 190 MobiDBLite consensus disorder prediction 139 153 - -
Lele50g0114 190 Pfam linker histone H1 and H5 family 44 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele50g0114 190 MobiDBLite consensus disorder prediction 11 29 - -
Lele50g0114 190 MobiDBLite consensus disorder prediction 104 190 - -
Lele50g0114 190 MobiDBLite consensus disorder prediction 1 46 - -
Lele50g0114 190 SMART h15plus2 41 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele50g0114 190 CDD H15 41 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele50g0114 190 PANTHER HISTONE H1 19 172 - -
Lele50g0114 190 Gene3D - 38 127 IPR036388 -
Lele50g0114 190 SUPERFAMILY "Winged helix" DNA-binding domain 40 114 IPR036390 -
Lele50g0114 190 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele50g0114 190 PRINTS Histone H5 signature 57 74 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele50g0114 190 PRINTS Histone H5 signature 30 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele50g0114 190 PRINTS Histone H5 signature 131 145 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele50g0114 190 PRINTS Histone H5 signature 161 178 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0114 Lele-ChrLele50 684980 685644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0114 30 116 Single Myb Histone (SMH) Gene Family AT1G72740 35.632 3.91e-08 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0114 50 684980 685644 Lele53g0008 53 125818 126925 CCT
Lele50g0114 50 684980 685644 Lele54g0007 54 146282 147612 CCT
Lele50g0114 50 684980 685644 Lele55g1485 55 20964075 20965488 CCT
Lele50g0114 50 684980 685644 Lele56g1416 56 17203362 17204673 CCT
Lele50g0114 50 684980 685644 Lele51g0108 51 622791 623456 hybridization
Lele50g0114 50 684980 685644 Lele52g0113 52 673963 674630 hybridization