Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0113 ATGCGAGCTAGAAACGCTGATTCTTCCAAAACAGCGGCTGCTAAGAAGACACAGCGGACGAGGAAATCCGCATCTAAAAGTCCGGCGAACGCACAATCGCCTCAGACCAAGCGCACCTCTACCATCCAAACTAGGCAGGCAAAGAAGAACGAGGCCTCGCCCTTACAAAACACAAGCTTTGATGAGGAACCGGAGCAATCATCTGAGGAGGCAAAAGAAGCGGCTGATGCTTCTCAGGTGACACCAGAGACAAAAGTTGTTACAGCTTCAAAGTCAACACCAAAGAGGACGCCAAAGAGAGCAGTGGGAAGACCTAGGAATTCAACTAAGGCTGTTACAACCCGGGAAAAGGAAGAACAAGTGGAGGCAATAACTGATGAAACACTGAAAGTGGATAATATTGAAGTAGCTGAGAAATTGGAGGAGCCTCTAAATGTTGAGGTAGTCAAAACAGATGAAATTGAAAATAAAGAAGTGGGGGAACAAGGTGTTGAGTTTGTTAGACAATCTGCAGGGAATGAACAGCATCCCAAGGAAGGGGATGAGTGTAATGCTGATAGTGCTTGTGAATCAGCAGAGAAGAAAAGAGACGTAGTTGAAGCTGTAGTATCTGCCTCTCATGGTGTCCCTATTTTGTTGAATCAAGAAGAACCTGCCATGATGGAGCTCTCTAAATCTCTGGAGAATGAAGAACCCACTGATGCTAAAGAAGGAGAACAAACAAATGAAGAGGATGGGGAAAACGCATCAGAAAAATCAACGAAAAAAGAGACAGCTAGTATTGGACATAAAGAGCAATTTAATGCTGATTCTGTCAGTATAGACATGAAAGACCAAGGAGAGCAAGTGAAGGAAGAGGATGGAGAAAAAGAATCAGAAAAATCAATGGAAAAGGAGGGAGGAAATGTGTTAGAGAAATCCATGCAAGAGGAGACAATTAATATTATACATAACCAGGAATCTAATACTGATTCTGTTGAGAAAGAAATGACAAACCAATTTCTGCAAAATGATGTTAAACCTGAAAAGGAGAATCCAAGTGGTGATCAAGGCACCGAGGGTTGTAGTGAAAGGCTAGATCATGAAGAACAAGGGGAAGAGGAGGTTGTTGAGGTTGATCCTGAGGAGACTCGTGAAGAAGCTGAGGCATTGGATGAGGAACACAAGGAATTGTCAAGTATGGCAAAGGAGCGCAAGATTAAGAAAGAGAATGAAATATTTGTTGGTGGGCTTGATCGTGATGCTACAGAGGAAGATCTTAAAAAAGTTTTTGAGAATGTTGGGGAGATAGTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAGCAAAAATAAGGGCTTTGCATTCGTGAATTTTTCTTGTAAGGAACATGCAAAGAAAGCTTTGTCAGAAATGAAAAACCCTGTTATACGTGGTAAGCGATGTGGCACTGCACCCAGTGAGGATAATGACACATTATTCTTAGGAAATATATGCAATACATGGACAAAAGAAGCTATCAAACAGAAGTTGAAGGACTATGGTGTTGAGGGTGTTGAAAACATTACACTCGTCCCAGATGTTCACCATGAAGGACTAAGCCGGGGCTTTGCATTCCTTGAGTTCTCCTGTCATCATGATGCCATGCTTGCCTATAAGAGGCTTCAAAAGCCTGATGTAATCTTTGGACATGCTGAGCGAACAGTCAAAGTAGCCTTCGCCGAACCTGTACGAGAGCTGGATCCAGAGATTATGGCACAGGTGAAGTCTGTTTTTGTTGATGGTCTCCCTCCTCATTGGGATGAAGGCTGCATTAGGGAGCACTTTGAAGGTTATGGTGAAATCGTACGAATTGTACTTGCCCGGAATATGACCACTGCTAAGAGGAAAGATTTTGGATTTGTTGATTTCTCTACACATGAAGCCGCTGTAGCTTGTGTTGATGGTGTAAATAGTTCAGAATTTGTTGATGGAACACAAAAGACAAAAGTGAGAGCTAGACTTTCAAATCCTTTGCCTAAAACACAGGCTGTCAAGGGAGGCATGTGTGGTGGGTTCCGAATTGGTCATGCTCGAGGTGGAGCCTTTCCAAGATCTGCAAGGGGTTTTGGTCGTGGAGGACATGCTGTCAAGTTGGGAAATTTTAACAGGGATAGAAATTTTTATCGTGGAGGACACGGTCAAATTGGAAGAATGAGTTTCAGGAATGATCCAAATCTTAATAATGCATATCCAGATTTTCACCAGAGGCAGTTCGGTGAAAGGATGATTCCTTTGAGGGGTGGACATTATGCAGGCGCACAAGGTGCTGCAGTTGCTGGTCCATCTAGGCCTCATCTTGATAGAGCACGGTATGGCACCCCTGAGAGAGGCCCTGGTGAACCTATTCCCCCAAGGATGCCTTTCTCCCCCGAAGGACAGTTTGACAGGCCTTTTATGGGAAGGCATATTGATGATCCATATCTTTATGAAGACAGTGTGCGTGGGGTGAAGCGGCCATATTATATGACTGACCCAGATCCTAATTACATGGGGCCTGTTGGACTTCGTCCTCGACTGGATTATACAGATCCTGCTGTATTTCATGGCAGTCGTTACCATGATTCTATTGCAGCTGGCAGGGGACAGTACTCACATGATTATTATGGTGCTGATTATGGTGGAGATTCAAGAATCTCTTGGTGA 2664 0.4362 MRARNADSSKTAAAKKTQRTRKSASKSPANAQSPQTKRTSTIQTRQAKKNEASPLQNTSFDEEPEQSSEEAKEAADASQVTPETKVVTASKSTPKRTPKRAVGRPRNSTKAVTTREKEEQVEAITDETLKVDNIEVAEKLEEPLNVEVVKTDEIENKEVGEQGVEFVRQSAGNEQHPKEGDECNADSACESAEKKRDVVEAVVSASHGVPILLNQEEPAMMELSKSLENEEPTDAKEGEQTNEEDGENASEKSTKKETASIGHKEQFNADSVSIDMKDQGEQVKEEDGEKESEKSMEKEGGNVLEKSMQEETINIIHNQESNTDSVEKEMTNQFLQNDVKPEKENPSGDQGTEGCSERLDHEEQGEEEVVEVDPEETREEAEALDEEHKELSSMAKERKIKKENEIFVGGLDRDATEEDLKKVFENVGEIVEVRLHKNSSTSKNKGFAFVNFSCKEHAKKALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVENITLVPDVHHEGLSRGFAFLEFSCHHDAMLAYKRLQKPDVIFGHAERTVKVAFAEPVRELDPEIMAQVKSVFVDGLPPHWDEGCIREHFEGYGEIVRIVLARNMTTAKRKDFGFVDFSTHEAAVACVDGVNSSEFVDGTQKTKVRARLSNPLPKTQAVKGGMCGGFRIGHARGGAFPRSARGFGRGGHAVKLGNFNRDRNFYRGGHGQIGRMSFRNDPNLNNAYPDFHQRQFGERMIPLRGGHYAGAQGAAVAGPSRPHLDRARYGTPERGPGEPIPPRMPFSPEGQFDRPFMGRHIDDPYLYEDSVRGVKRPYYMTDPDPNYMGPVGLRPRLDYTDPAVFHGSRYHDSIAAGRGQYSHDYYGADYGGDSRISW 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0113 887 CDD RRM_SF 486 564 - -
Lele50g0113 887 Gene3D - 483 568 IPR012677 -
Lele50g0113 887 CDD RRM_SF 584 648 - -
Lele50g0113 887 SUPERFAMILY RNA-binding domain, RBD 400 476 IPR035979 GO:0003676
Lele50g0113 887 SMART rrm1_1 583 658 IPR000504 GO:0003723
Lele50g0113 887 SMART rrm1_1 405 478 IPR000504 GO:0003723
Lele50g0113 887 SMART rrm1_1 485 565 IPR000504 GO:0003723
Lele50g0113 887 MobiDBLite consensus disorder prediction 337 377 - -
Lele50g0113 887 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 482 IPR000504 GO:0003723
Lele50g0113 887 MobiDBLite consensus disorder prediction 213 304 - -
Lele50g0113 887 MobiDBLite consensus disorder prediction 81 95 - -
Lele50g0113 887 MobiDBLite consensus disorder prediction 23 62 - -
Lele50g0113 887 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 484 569 IPR000504 GO:0003723
Lele50g0113 887 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 582 664 IPR000504 GO:0003723
Lele50g0113 887 MobiDBLite consensus disorder prediction 172 194 - -
Lele50g0113 887 MobiDBLite consensus disorder prediction 277 304 - -
Lele50g0113 887 MobiDBLite consensus disorder prediction 1 120 - -
Lele50g0113 887 FunFam Heterogeneous nuclear ribonucleoprotein Q 484 568 - -
Lele50g0113 887 Gene3D - 572 726 IPR012677 -
Lele50g0113 887 Gene3D - 372 482 IPR012677 -
Lele50g0113 887 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 486 554 IPR000504 GO:0003723
Lele50g0113 887 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 584 648 IPR000504 GO:0003723
Lele50g0113 887 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 474 IPR000504 GO:0003723
Lele50g0113 887 FunFam Heterogeneous nuclear ribonucleoprotein Q 569 719 - -
Lele50g0113 887 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 236 856 - -
Lele50g0113 887 MobiDBLite consensus disorder prediction 242 263 - -
Lele50g0113 887 CDD RRM_SF 406 474 - -
Lele50g0113 887 MobiDBLite consensus disorder prediction 170 194 - -
Lele50g0113 887 SUPERFAMILY RNA-binding domain, RBD 482 649 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0113 Lele-ChrLele50 675319 680000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0113 406 650 Eukaryotic Initiation Factors Gene Family AT2G23350 24.603 3.45e-14 74.7