Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0110 ATGAAGCGCGCAAGGAAATCGCACAGGGTTTCGTGGGCTCCTGGATTTAATCTGTGTCAGGTGAAGTTGTTCTTATCTGAAGACTCCCCATCGAAAGTTAGCCAGACATCTCCAGTTCTTCAAGCAAAGGCATCATCAATGTTGCATTCAAGCACTGCTGAATCTGATGATTTACCTCCTGGCTTTAAAGGCAATCATTTTTCGAACCATCTAAGAAACGAACTCTCCCACTTATATCAGATTAAATGGAAAGCTCCTCCCCTGTTTGCTCTCAGTCAAAATTGGCTAGTTGTAGCTGGTGAAGAAAGTAGGGAGAAAATGGATCAAAAGCTAAGAGAAATGAAGGTGCTTGAAGCAGTATATCCGCGCCCGTCATCTATTCCTCCAAGTCCATCGGTTTCTTTAGTTGTAGAGGAGGAAGACTATGATGATAACCTCACTCCTTTTATCCCTATCGTCCCCATTGAGGAAGAAGAGCCTATGGATATTAACCCTGAATTGCCAGCAACCATTGGCACCTCCGCCACTCTGCAGACACAAAGTTTGCACCAATCCATATCAGCAACAGATAGACCATTATGTTCACAGCCTAGCACCTCATCCACTCTAGCCTCACCTGGGACATCTGGTTTGGAAGCAGATCTTGCTGCAGCTTCTGCTGTTGTTGCTGCCATCATGAATAGTAATGAGCAAGGCAGCTCAGTTGACATGGATCTACTTGTTAGAATACTTAATGATCCATTAGTGATTGAGAAGTTGAGAAGTGCTCATGATGGAGCTGCAGCGACCACTATAAGTGCATCTACAAATATAGTGGGTTTACCTAGTTCTAGGTTCAAGTGCGCTTCTCCATCAGTTTCATCATCTACACTTAGACCTGATAAGCCAACTTCTGGGGTTAATACCTCAAGTATTGCGGGTTTATTTCCTGATTCTGGCTTGATGCCAGCTACTTCTGTTCAATTGATGCACATGCATACTCTTGATAAGCCAGCAACCTCGTCACTTCCGTTCTCTAGGCCTATGCCAGGGAAACTAGCAACTCAGTCAGCTCCATTGCCTTCCCATGCAACTACTGCTGATATTCACATGCCTGTGAACGGAACCACTGACCATTTGTCAAGTGGTGGTCTGCCTTCTGTAAGTACCCAACGTACTCAACAAGATACTGTTAAGCTAGCAGCACCCATGTCATCCATTTCATCCAGGGAACCGAGCATAATGCCATTACCTTCAACAGGCGTGAGCTTGCCTGCAGTAGTAAACCAGGTGCGATCCCCTACAACTACAATGGCTTACCGACCTAGTGTAGGCTCAGCATTTGCTGGGAAGGAAGCTCAGCCTGTTAAGGATCTTGCCTATTATAAGAGCCTTGTTAGGCAACATGGTGCTGATGGTAATAATATTAGGCAAGAGGCGCATGACTCCCAAATAGCTATCCGTCAAACTAATTTCAAAGATTTGAAACCGGTTCATAAAAATAAACCAGGAGAAGTGAATTTCAAGATCCAGAGACCTTGCATGTACTTCAAAAGTTCCAGGGGTTGTCGGAATGGTTCCAATTGCCCTTATCAACATGACATGTCAGCACAATGGGGGTCTTGTAACAGCCTAGGGTCCCAGATTGCAAAAAGAGCTAAATTAGAATCAGGAGTCAGGGGTAGAACATTAATTTAG 1677 0.446 MKRARKSHRVSWAPGFNLCQVKLFLSEDSPSKVSQTSPVLQAKASSMLHSSTAESDDLPPGFKGNHFSNHLRNELSHLYQIKWKAPPLFALSQNWLVVAGEESREKMDQKLREMKVLEAVYPRPSSIPPSPSVSLVVEEEDYDDNLTPFIPIVPIEEEEPMDINPELPATIGTSATLQTQSLHQSISATDRPLCSQPSTSSTLASPGTSGLEADLAAASAVVAAIMNSNEQGSSVDMDLLVRILNDPLVIEKLRSAHDGAAATTISASTNIVGLPSSRFKCASPSVSSSTLRPDKPTSGVNTSSIAGLFPDSGLMPATSVQLMHMHTLDKPATSSLPFSRPMPGKLATQSAPLPSHATTADIHMPVNGTTDHLSSGGLPSVSTQRTQQDTVKLAAPMSSISSREPSIMPLPSTGVSLPAVVNQVRSPTTTMAYRPSVGSAFAGKEAQPVKDLAYYKSLVRQHGADGNNIRQEAHDSQIAIRQTNFKDLKPVHKNKPGEVNFKIQRPCMYFKSSRGCRNGSNCPYQHDMSAQWGSCNSLGSQIAKRAKLESGVRGRTLI 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0110 558 ProSiteProfiles Zinc finger C3H1-type profile. 501 529 IPR000571 GO:0046872
Lele50g0110 558 MobiDBLite consensus disorder prediction 180 209 - -
Lele50g0110 558 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 549 - -
Lele50g0110 558 MobiDBLite consensus disorder prediction 180 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0110 Lele-ChrLele50 659764 663537 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele50g0110 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0110 50 659764 663537 Lele51g0104 51 596002 600847 hybridization
Lele50g0110 50 659764 663537 Lele52g0109 52 643875 647750 hybridization