Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0098 ATGGGCACCTGCTTCTCTTCCACGAAAGTCAGTGGCTCCAACAGCAATACCACGGCGAACGGCGCCACCGCCGTCCATCACAATCGCAACGAGCCCGCCAAGCCTCAATCCCGCACAACCGGGGTTAAATCCCAAGCGTCGAACGGCCAACGGCCAAAAGTACCGCATGAGATCCGTAACGCTCAGCCGAACAAGAATTCCCAGCATCGGCCCAAGCCCAAAGACAAGCAAAATCCCAAACGCCAGCCGTGCGGGAAACGGACCGATTTCGGCTACGACAAAGATTTCGATGCGCGTTACTCGCTCGGAAAATTGCTGGGACACGGTCAATTTGGTTACACATATGTTGGAGTAGACCTAGCTAATGGGGATCGGGTGGCGGTGAAAAGAATTGACAAGAGCAAGATGATTCTCCCAATTGCTGTTGAGGATGTTAAGCGAGAGGTCAAGATTTTGAAAGAACTCACAGGCCACGAGAATGTGGTTCAGTTCTATAATGCATTTGAGGACGATTCATATGTATACATAGTTATGGAGTTATGCGAGGGTGGAGAACTATTAGATCGCATATTGGCCAGGAAAGACAGCCGATATACGGAAAAAGATGCAGCAGTAGTTGTAAGGCAGATGCTCAAAGTTGCAGCTGAGTGTCATTTACATGGTTTGGTCCACCGGGACATGAAACCGGAGAATTTTCTTTTCAAATCAGCTAAAGTAGACTCACCTTTGAAGGCTACAGATTTTGGTTTGTCAGATTTTATTAAACCTGGAAAGAAGTTTCATGATATTGTTGGCAGTGCTTATTATGTTGCACCTGAAGTGTTGAAGCGCAAGTCAGGCCCAGAATCAGATGTATGGAGTATTGGTGTAATTACGTACATATTACTTTGTGGGAGGCGCCCATTTTGGGATAAGACGGAGGATGGTATCTTTAAGGAGGTATTACGTAACAAGCCTGATTTCCGGCGGAAACCATGGCCGTCTATAAGTAATGCTGCGAAAGATTTTGTGAAGAAATTGCTAGTAAAGGATCCTCGGGCCAGATTAACTGCTGCTCAGGCTCTATCTCATCCATGGGTTAGGGAAGGAGGAGAGGCATCGGAGATTCCTATCGATATATCTGTCCTAAGCAACATGCGGCAATTTGTGAGATTTAGTAGGTTGAAACAATTTGCACTCAGGGCTCTAGCTAGCACGCTTAATGAAGAAGAGTTGGCTGATCTCAGAGATCAATTTGATGCAATCGATGTGGACAAAAGTGGTGCTATTAGTCTAGAAGAGATGAGACATGCTCTTGCTAAGGATATCCCTTGGAAGTTGAAAGATTCCCGTGTTGTAGAGATATTACAAGCGATAGATAGCAACACAGATGGGCTTGTGGATTTCTCCGAGTTTGTGGCTGCTACATTGCACGTACATCAATTGGAGGAGCATGACTCAGAAAGGTGGCTTCACCGGTCACAAGCTGCTTTCGAGAAATTTGATATAGACAAGGATGGCTATATTACTTCAGAAGAACTTAGATTGCATACGGGCTTACGAGGGTCCATTGATTCGCTACTTGAGGAAGCTGACATTGACAAAGACGGAAAAATCAGCCTCCCAGAGTTTCGAAGGCTCCTGAGAACTGCGAGCATGAGTTCACAAACTGTGACAACCCCACGTAGGATGTTAGATTAG 1680 0.4601 MGTCFSSTKVSGSNSNTTANGATAVHHNRNEPAKPQSRTTGVKSQASNGQRPKVPHEIRNAQPNKNSQHRPKPKDKQNPKRQPCGKRTDFGYDKDFDARYSLGKLLGHGQFGYTYVGVDLANGDRVAVKRIDKSKMILPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILARKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSAKVDSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPSISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLSNMRQFVRFSRLKQFALRALASTLNEEELADLRDQFDAIDVDKSGAISLEEMRHALAKDIPWKLKDSRVVEILQAIDSNTDGLVDFSEFVAATLHVHQLEEHDSERWLHRSQAAFEKFDIDKDGYITSEELRLHTGLRGSIDSLLEEADIDKDGKISLPEFRRLLRTASMSSQTVTTPRRMLD 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0098 559 SMART serkin_6 100 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0098 559 SMART efh_1 407 435 IPR002048 GO:0005509
Lele50g0098 559 SMART efh_1 486 514 IPR002048 GO:0005509
Lele50g0098 559 SMART efh_1 444 472 IPR002048 GO:0005509
Lele50g0098 559 SMART efh_1 516 544 IPR002048 GO:0005509
Lele50g0098 559 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Lele50g0098 559 CDD STKc_CAMK 99 359 - -
Lele50g0098 559 ProSitePatterns EF-hand calcium-binding domain. 495 507 IPR018247 -
Lele50g0098 559 MobiDBLite consensus disorder prediction 1 25 - -
Lele50g0098 559 FunFam CDPK-related kinase 1 93 185 - -
Lele50g0098 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Lele50g0098 559 MobiDBLite consensus disorder prediction 68 90 - -
Lele50g0098 559 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Lele50g0098 559 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Lele50g0098 559 SUPERFAMILY EF-hand 389 543 IPR011992 -
Lele50g0098 559 Pfam EF-hand domain pair 407 469 IPR002048 GO:0005509
Lele50g0098 559 Pfam EF-hand domain pair 489 541 IPR002048 GO:0005509
Lele50g0098 559 Gene3D - 401 470 - -
Lele50g0098 559 ProSitePatterns Protein kinases ATP-binding region signature. 106 129 IPR017441 GO:0005524
Lele50g0098 559 ProSiteProfiles Protein kinase domain profile. 100 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0098 559 MobiDBLite consensus disorder prediction 34 51 - -
Lele50g0098 559 Pfam Protein kinase domain 100 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0098 559 ProSiteProfiles EF-hand calcium-binding domain profile. 518 547 IPR002048 GO:0005509
Lele50g0098 559 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Lele50g0098 559 FunFam calcium-dependent protein kinase 28-like 186 379 - -
Lele50g0098 559 Gene3D Transferase(Phosphotransferase) domain 1 186 380 - -
Lele50g0098 559 PANTHER SERINE/THREONINE-PROTEIN KINASE 78 529 - -
Lele50g0098 559 Gene3D Phosphorylase Kinase; domain 1 93 185 - -
Lele50g0098 559 ProSiteProfiles EF-hand calcium-binding domain profile. 482 517 IPR002048 GO:0005509
Lele50g0098 559 SUPERFAMILY Protein kinase-like (PK-like) 99 374 IPR011009 -
Lele50g0098 559 Gene3D - 381 540 - -
Lele50g0098 559 FunFam Calcium-dependent protein kinase 28 401 470 - -
Lele50g0098 559 MobiDBLite consensus disorder prediction 1 90 - -
Lele50g0098 559 ProSitePatterns EF-hand calcium-binding domain. 525 537 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0098 Lele-ChrLele50 603285 607421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0098 1 554 EF-hand Containing Proteins AT2G17890 75.661 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele50g0098 Pkinase 1e-68 CL0016