Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0095 ATGTCTTCGTGCACGTCGCTGTACGAGATTCTAGGGATTCCGGCGGGCGCGTCCCATCAAGAAATTAAGGCCGCCTACCGACGTTTGGCGAGAGTGTGCCATCCAGACGTGGCGGCGGTGGATAGGAAGGATTCGTCGGCGGACCAGTTTATGAAGATTCGCGCCGCGTACTCCACTCTGTCGGATCCAGAAAAGCGGGCTACTTACGACAGGAGCCTCTTCGTCCGTCGACAGAGGCCTTTGTCCATGTCGTCTTCATTCTCCGGTTACGGTGGCCGGAACTGGGAAACGGACCAGTGTTGGTAG 306 0.5752 MSSCTSLYEILGIPAGASHQEIKAAYRRLARVCHPDVAAVDRKDSSADQFMKIRAAYSTLSDPEKRATYDRSLFVRRQRPLSMSSSFSGYGGRNWETDQCW 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0095 101 CDD DnaJ 8 62 IPR001623 -
Lele50g0095 101 Gene3D DnaJ domain 1 88 IPR036869 -
Lele50g0095 101 Pfam DnaJ domain 7 70 IPR001623 -
Lele50g0095 101 ProSiteProfiles dnaJ domain profile. 6 73 IPR001623 -
Lele50g0095 101 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 101 - -
Lele50g0095 101 SUPERFAMILY Chaperone J-domain 2 76 IPR036869 -
Lele50g0095 101 ProSitePatterns Nt-dnaJ domain signature. 50 69 IPR018253 -
Lele50g0095 101 SMART dnaj_3 5 65 IPR001623 -
Lele50g0095 101 PRINTS DnaJ domain signature 8 26 IPR001623 -
Lele50g0095 101 PRINTS DnaJ domain signature 45 65 IPR001623 -
Lele50g0095 101 PRINTS DnaJ domain signature 26 41 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0095 Lele-ChrLele50 590672 590977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0095 8 70 C2H2 Transcription Factor Family AT1G74250 44.776 1.04e-09 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0095 50 590672 590977 Lele51g0090 51 515078 515575 hybridization
Lele50g0095 50 590672 590977 Lele52g0094 52 568591 569088 hybridization