Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0091 ATGGCGGAGGAGAGATCAACTGGTGTGGTTCAGTGGTTCAGCTATTCTAAAGGCTTTGGCTTTATCAAGCCCGATGATGGAGGAAAAGATCTCTTTGTTCATCAATCTTCCATCAGATCCGAAGGATATCGTAGTCTGGTAGAAGGCGATCGCGTCGAGTTCGTGATTGTCTCCGGTGACAACGACAAAACCAAAGCCATCGATGTTACTGGCCCCAACGGAGCTCCTCTACAATCCAAGAAAGACAATTACGATGGTCGAGATGGGGGCTATAGCTTTAGCGGTGGATGGAGGGGTGGGGATAGGCGTAATAGCGGAGGAGCGAGCGGTGCTGGCTGTTATCAGTGCGGTGATGTCGGCCATTTAGCCAGAGATTGCAACCGGGGCAATAATGCCGGTGGCCCTTCTTGTTTTAAATGTGGTGAAGTTGGGCATTTGGCTAGGGACTGTTCACTTGGAAATAATGGCGGCGGCGGGGCTTGCTTTAGGTGTCATGAGTATGGGCACATGGCGAGGGACTGCACCAGGGGAAGCGGTGGGGGCGGTGGAGGTTGCTTCACATGTGGTGAAGTGGGTCACTTGGCCAGGGATTGCAACAAAGGAAGCGGAAGGCATGGCGGCAGTGGCGGCACCCAAGGAAATGCATGCTTTAATTGTGGGAAGCGTGGGCATTTTGCGCGAGAGTGCCCTGATTTTATCTACTTGTTGGCTCTTTTTGAAATTTATATATTGGTTGTTCGTGCAAAGGATTATGACTTTGGTTCTGGTTACATTGAGATAGATACATGGGCCCCTAGCATTTTTGAAACTGAGGCAGTGAAGTCTGTTCTCAGATCCCTCATACATTCTGAGATCTCTGGGGAGGCGGCTTCGATTAAGATTTACTGCTTTCACTGCTTTCTCGTGCGTTGGTCTTATGATCCGATGGATGATAATAGTCTCGAATCTGAAGATGCATCTGGGCCCGTTGATGTTTCTCAGAGTCAAACCGAAACAATCAGAGTAGCCCGTAGCAAAGGGTGTTCAGTCGAGATGGAGTGGGGAAAAATAAAATCAGGTGCATACGGAATAGCACGCAACCAGTTACTTGAGTTGTCACCATATATAGAGGTTGACCAGTCATGGCCTAAACCCTGTTGGTCCTTTGGATCTGCAACTGCTCTCATACATATCACTTTATTCCCTCCTCCTCCTAACCTTTTGTTCCAATCCTCGTATCTCTCGATCATGGCTTCTTCTGCTCCAATCGTTACCACCTTCTTCTCTCTCCTTCTCCTCCAATTCCTAACAGGTTCGTATTGTGCAACATTCACCATCGTCAACAAGTGCGGCTACCCGGTGTGGCCCGGCATTTTGTCCAACGCTGGAACTCCCCAACTCTCAACGACCGGTTTCGCCCTCCAACCGGGGGAATCCAACGCCGTCACCGTCCCCGCTGGGTGGTCCGGTCGCCTGTGGGGTCGTACCCTCTGCTCCCAGGACTCCGGCGGGAAGTTCTCCTGCGTGACCGGGGACTGCGGGTCCTCCGGCATAGAATGCGGGGGAGGCGGTGCCGCCCCACCTGCTACGCTGGCGGAGTTCACGCTGAACGGAGCAGGGGGGATGGACTTCTACGACGTGAGCCTGGTGGACGGTTACAACCTCCCGATGACGGTGGAGCCGCAGGGGGGCGCCGGGGGAGGGAACTGCACGTCGACAGGGTGCGTGGTGGATCTGAACGGGGCGTGTCCGACGGAGCTGAAGGTGACGTACGGGGCGAGCGGGGGGGAAGAAGGGGTGGCGTGCAAGAGCGCGTGCGAAGCATTCGGGGAGGCGGAGTACTGCTGCAGCGGGGCGTACGCGACTCCCCAAACGTGTAAGCCGAGCAGGTACTCGGCATTCTTCAAGGCGGCGTGCCCACGCGCTTACAGTTACGCGTATGACGATGGGACGAGCACCTTCACCTGCGCGGCTGCCGATTACGCGATCACATTCTGCCCCGGCCCCACCACAAGCTTGATGAAGGCGGGGAAGGAGAAATACGCAGAGGCGGCGGATGTATCGTCAGGGGGGCACGGTGGAGGTAGGTGGAGGATGCAATGGGTGTTGGGTGGAGTGATGGCGTTTTGGATGTTGAGTTGGCGTCTTGGTTGCCTCCGTTAG 2142 0.5486 MAEERSTGVVQWFSYSKGFGFIKPDDGGKDLFVHQSSIRSEGYRSLVEGDRVEFVIVSGDNDKTKAIDVTGPNGAPLQSKKDNYDGRDGGYSFSGGWRGGDRRNSGGASGAGCYQCGDVGHLARDCNRGNNAGGPSCFKCGEVGHLARDCSLGNNGGGGACFRCHEYGHMARDCTRGSGGGGGGCFTCGEVGHLARDCNKGSGRHGGSGGTQGNACFNCGKRGHFARECPDFIYLLALFEIYILVVRAKDYDFGSGYIEIDTWAPSIFETEAVKSVLRSLIHSEISGEAASIKIYCFHCFLVRWSYDPMDDNSLESEDASGPVDVSQSQTETIRVARSKGCSVEMEWGKIKSGAYGIARNQLLELSPYIEVDQSWPKPCWSFGSATALIHITLFPPPPNLLFQSSYLSIMASSAPIVTTFFSLLLLQFLTGSYCATFTIVNKCGYPVWPGILSNAGTPQLSTTGFALQPGESNAVTVPAGWSGRLWGRTLCSQDSGGKFSCVTGDCGSSGIECGGGGAAPPATLAEFTLNGAGGMDFYDVSLVDGYNLPMTVEPQGGAGGGNCTSTGCVVDLNGACPTELKVTYGASGGEEGVACKSACEAFGEAEYCCSGAYATPQTCKPSRYSAFFKAACPRAYSYAYDDGTSTFTCAAADYAITFCPGPTTSLMKAGKEKYAEAADVSSGGHGGGRWRMQWVLGGVMAFWMLSWRLGCLR 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0091 713 SUPERFAMILY Retrovirus zinc finger-like domains 105 152 IPR036875 GO:0003676|GO:0008270
Lele50g0091 713 SMART csp_8 7 72 IPR011129 GO:0003676
Lele50g0091 713 ProSiteProfiles Zinc finger CCHC-type profile. 161 176 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 Gene3D - 1 83 IPR012340 -
Lele50g0091 713 SUPERFAMILY Retrovirus zinc finger-like domains 202 232 IPR036875 GO:0003676|GO:0008270
Lele50g0091 713 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lele50g0091 713 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lele50g0091 713 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lele50g0091 713 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lele50g0091 713 SMART c2hcfinal6 215 231 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 SMART c2hcfinal6 160 176 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 SMART c2hcfinal6 112 128 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 SMART c2hcfinal6 184 200 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 Pfam Thaumatin family 441 660 IPR001938 -
Lele50g0091 713 SUPERFAMILY Osmotin, thaumatin-like protein 435 661 IPR037176 -
Lele50g0091 713 Gene3D - 105 156 - -
Lele50g0091 713 Gene3D - 208 231 - -
Lele50g0091 713 Gene3D - 180 207 - -
Lele50g0091 713 Gene3D - 157 179 - -
Lele50g0091 713 ProSiteProfiles Thaumatin family profile. 435 660 IPR001938 -
Lele50g0091 713 ProSiteProfiles Zinc finger CCHC-type profile. 185 198 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 SUPERFAMILY Retrovirus zinc finger-like domains 153 201 IPR036875 GO:0003676|GO:0008270
Lele50g0091 713 ProSiteProfiles Zinc finger CCHC-type profile. 113 126 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 ProSiteProfiles Zinc finger CCHC-type profile. 216 231 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lele50g0091 713 PANTHER OS03G0233200 PROTEIN 421 660 IPR001938 -
Lele50g0091 713 Pfam Zinc knuckle 215 230 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 Pfam Zinc knuckle 160 175 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 Pfam Zinc knuckle 136 151 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 Pfam Zinc knuckle 184 199 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 Pfam Zinc knuckle 112 126 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 SMART tha2 437 660 IPR001938 -
Lele50g0091 713 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Lele50g0091 713 CDD TLP-PA 436 659 - -
Lele50g0091 713 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lele50g0091 713 FunFam THAUMATIN-LIKE PROTEIN 1 435 660 - -
Lele50g0091 713 Gene3D Thaumatin 435 660 IPR037176 -
Lele50g0091 713 PRINTS Pathogenesis-related protein signature 650 659 IPR001938 -
Lele50g0091 713 PRINTS Pathogenesis-related protein signature 436 448 IPR001938 -
Lele50g0091 713 PRINTS Pathogenesis-related protein signature 536 552 IPR001938 -
Lele50g0091 713 PRINTS Pathogenesis-related protein signature 484 495 IPR001938 -
Lele50g0091 713 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Lele50g0091 713 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0091 Lele-ChrLele50 572102 577669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0091 417 705 Receptor kinase-like Gene Family AT5G38280 46.897 4.60e-86 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lele50g0091 Thaumatin 5.4e-84 CL0293