Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0086 ATGGACCGGTGCCCATATATGAAGCACACTCAGTTCAACTTACGAGATGAGCTCTTCTGAATGCTTTTGAAATGGCATTATTCATATGGTCCCTTCTTCATAACGTTTCCTCTTTATGTCATCTTCAAGCAGGTTCAACTTGTTCGTCTTCTTCCGCTTGCTGTTATTGTTGTCGTCAGAATATATCCTTCATCAATCATAAGGCAGGCATTTAATCTGCTGGCTTCAAGAGTATTGATGGATTATCTCCGTGAATGGATATGCAGATGGGGTCACGGTTCCAAAAGTCGGTGGGCCGTTACTCATAGGCTCCGTCCGGAGAGAAGATTAGCCTTGTTAACTGGAACGGAAGCAACCCTCTCTAGCAAGCAAACCTCAGCTCTCCTTCTTCGTTTGAGGTACAATTCAGAAGGCTGTTTGTCTATAAGGTGCGGACTCCCACTAGATCGTTGGCTTCTAAAATCTACGACCATGGTGCTCGAGGCGACAATGATCTGTATTGACAATTCCGAATGGATGCGAAACGGGGATTACGCGCCTTCTCGATTTCAAGCTCAAGCAGATGCTGTCAATCTTATCTGTGGTGCTAAAACCCAGTCTAATCCAGAAAATACAGTCGGAGTTCTCACGATGGCAGGGAAGGGAGTTCGGGTTTTGGTGACTCCCACCAGTGATCTGGGCAAGATCTTAGCTTGCATGCATGGACTAGAAATTGGCGGGGAAATGAACCTAGCCGCTGGTATTCAAGTAGCACAATTGGCTCTCAAGCATCGGCAAAATAAGAAACAACAGCAAAGAATTATCATTTTTGCTGGAAGTCCTGTCAATCACGAGAAGAAGTTGCTGGAGATGATTGGAAGAAAACTAAAAAAGAACAGCGTTGCCCTTGACATTATCAATTTTGGTGAAGAAGATAAAGGCAAGACTGAAAAGCTGGAGGCACTTCTTGCAGCCGTTAATAATAATGATACAAGCCACATTATCCATGTTCCTGCTGGTCCCAATGCTCTTTCTGATGTACTTATAAGTACACCTATTTTTACTGGAGATGGGGAAGGTGGAAGTGGTTTTGCTGCTGCAGCAGCTGCAGCTGCAGCTGGTGGTGTATCTGGTTTTGAGTTTGGTGTGGATCCAAACTTGGATCCTGAGCTAGCGCTCGCTTTAAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAGGAGGCAGCTGCAAAAAAGGCTGCTGAGGATGCTGCCAAACAGGAGCAAGGAGGTGATCAGCAATCCAGTTCACAAGATGCAACAATGACTGAGCGAACCAGTGCTGCAACATCTGAAGCTGATAACAAGACAAATGATATGATGGATGATGAGAATGCTCTCCTGCAGCAAGCACTTGCAATGTCAATGGATGATCCTGCCAGTAACCATGACTTAAGGGATACGGATATGTCAGAAACAACTGCAGAAGATCCCGATTTGGCCCTTGCCCTTAAATTGTCAGTAACAGACAATACAAAGGACTCAGGAAGCCAGTCAGACATGAGTAAATTGTTGGCTGATCAGTCCTTCGTATCTTCTATCCTTGCTTCACTTCCTGGGGTTGACCCAAATGACCCATCCGTCAAAGATCTGCTGGCCTCCATGCAAAGTCAGTCTGAGCCCCAACAGAAGGATGAAGATAAGCCGCCGAATGAGGAGGAAAAGAAATAA 1689 0.4553 MDRCPYMKHTQFNLRDELFXMLLKWHYSYGPFFITFPLYVIFKQVQLVRLLPLAVIVVVRIYPSSIIRQAFNLLASRVLMDYLREWICRWGHGSKSRWAVTHRLRPERRLALLTGTEATLSSKQTSALLLRLRYNSEGCLSIRCGLPLDRWLLKSTTMVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIIFAGSPVNHEKKLLEMIGRKLKKNSVALDIINFGEEDKGKTEKLEALLAAVNNNDTSHIIHVPAGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQEQGGDQQSSSQDATMTERTSAATSEADNKTNDMMDDENALLQQALAMSMDDPASNHDLRDTDMSETTAEDPDLALALKLSVTDNTKDSGSQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSEPQQKDEDKPPNEEEKK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0086 562 Pfam von Willebrand factor type A domain 163 272 IPR002035 -
Lele50g0086 562 Pfam Ubiquitin interaction motif 381 394 IPR003903 -
Lele50g0086 562 Pfam Ubiquitin interaction motif 449 464 IPR003903 -
Lele50g0086 562 Pfam Ubiquitin interaction motif 482 493 IPR003903 -
Lele50g0086 562 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 449 468 IPR003903 -
Lele50g0086 562 SUPERFAMILY vWA-like 161 331 IPR036465 -
Lele50g0086 562 SMART VWA_4 159 332 IPR002035 -
Lele50g0086 562 FunFam 26S proteasome non-ATPase regulatory subunit 4 160 343 - -
Lele50g0086 562 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 158 553 - -
Lele50g0086 562 MobiDBLite consensus disorder prediction 496 562 - -
Lele50g0086 562 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 379 398 IPR003903 -
Lele50g0086 562 MobiDBLite consensus disorder prediction 399 484 - -
Lele50g0086 562 MobiDBLite consensus disorder prediction 496 521 - -
Lele50g0086 562 Coils Coil 389 414 - -
Lele50g0086 562 CDD VWA_26S_proteasome_subunit 158 345 - -
Lele50g0086 562 Gene3D von Willebrand factor, type A domain 160 343 IPR036465 -
Lele50g0086 562 MobiDBLite consensus disorder prediction 547 562 - -
Lele50g0086 562 FunFam 26S proteasome regulatory subunit N10 377 463 - -
Lele50g0086 562 SMART uim 449 468 IPR003903 -
Lele50g0086 562 SMART uim 379 398 IPR003903 -
Lele50g0086 562 SMART uim 481 500 IPR003903 -
Lele50g0086 562 Gene3D - 377 463 - -
Lele50g0086 562 ProSiteProfiles VWFA domain profile. 162 346 IPR002035 -
Lele50g0086 562 MobiDBLite consensus disorder prediction 414 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0086 Lele-ChrLele50 546705 553350 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0086 50 546705 553350 Lele54g0545 54 11893061 11894809 CCT
Lele50g0086 50 546705 553350 Lele56g0889 56 7479772 7481399 CCT
Lele50g0086 50 546705 553350 Lele51g0082 51 478768 482873 hybridization
Lele50g0086 50 546705 553350 Lele52g0083 52 517647 521899 hybridization