Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0082 ATGTCACCTAAACAAGATATAGAGGAAATTTCTTCTGGGAATTCTGTATATTCACCGGCTTCAACCTCGCCAATGGGTAGCAGATTCAGACTTGTGTTTGATAGATTATGGGCTTTTGCCTCTTCTTTGAAGAAGAGCAGCACACCACGTGGTCGACGAATTTTCCACAGAGATGTCGAAAAAGAAGAATTCCGGTATGCCCGCACTCAATGCCTCTCATCCTACTACAGTGTGTTCGTGGTTCGCCTGGCAATCATGGCCATGCTAGCCATCTTGATTGGGCTGCTCACTATATTAACGTGGCATTTCACCAAGAGTTATACGGCAAAATCACTGGATAACTTAGCATATGGGCTTCGTTACGAATTACTGCAGCGCCCCATCTTACGGATGTGGAATATCTTGAATTCTACTGCTGAAATTACAAAAGCTCAGGTTGAGCTGTCTGAGTATGTGATCAGACGATACAACAACCCTGCCAATCAAGCAGAACAAGTTGAGCTGTACGAAGCTATGAGGTCTGTAACCTGGGCCCTCTTCTCTAGCAGCAAGGCACTCAATTCAATAACTATCAATTACAGGAACGGCTTTGTTCAGGCATTCCACAGAGATCTTAAGGATAACAATACATTTTACATCTACTCCGATCTTGCAAACTACTCCATAGGTGCCAATGAGATGAAATCACTCTCAACACATCAAGCTTGGAACGATGAAGCCATTCGTGGTAACAGTTCTGCAACTTGGTATCGTGAACCACTTAACCCTCTTAGTGGTGTGAAGATTGGAAAAGCTAAGAAGATTGCGCCAGAAGACTTGATTAATATTGCTGGCATTTATCAAGTCCCTGATGAGGCGGCTTCATGGCATGTTGCTGTGAGCAAGTTTACTGATTCACCATTGCTTTCTGCTGCGCTGCCAGTTTGGGACTCTTCCAATAAGAGCATTGTGGCAGTTGTGGGTGTCACAACCGCTCTTTATAGTGTTGGCCAGCTAATGAAAGAACTAGTTGAATTTCATAGTGGTTATATCTATTTGACCTCCCTAGAGGGTTACTTACTTGCCACTTCCACAAATGCTCCACTGCTAACAAATTCAAAGCCTCTCAAGCTTAAGATGGCTGTTGATTGTGAAGATGATGTAATACGTTTGGGAGCCCAGTGGCTGAAGAGAACCTACGGGAAGAATTTTCCTCCAAGTCATGGGGTTCACGTAGAGGATGTCAAGCTAGGCCATCAGCAATATTACATCGACTCATTCTTTTTAAATTTGAAGAGGCTTCCTCTGGTGGGTGTTATCATTATTCCAAGAAAGTATATTATGGGGAAGGTTGATCAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCGTTGTGTATTCTAGTCATTGGATGTGTTTGCATTTTAATTCTGACAAATGGGGTATCAAAGGAAATGAAACTAAGAGCTGAACTAATCAGTCATCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACCATAAAAGTCAGTTTCTTGCAAACATGAGTCATGAATTGAGGACACCTATGGCAGCAGTGATTGGGTTGCTTGACATTCTTATATCTGATGATTGTCTAACAAATGAACAATATGCAACAGTTACTCAGATAAGAAAATGCTCAACTGCATTACTCCGTCTTCTTAACAACATATTGGACATCAGCAAGGTGGAATCCGGAAAATTGGTGTTAGAAAATGCAGATTTTGACTTGGGGCGGGAGCTTGAAGGGCTTGTAGACATGTTTTCTGTGCAGTGCATTAACCACAACGTAGAGACTGTTTTGAACCTATCAGATGATATGCCAAAGGTAGTTCAGGGTGATTCTGCTAGAGTTGTTCAAATTTTTGCAAACTTGATCAACAATTCAATTAAGTTTACTCCATCTGGTCACATTATTCTTCGAGGATGGTGTGAGAACCCAAATTGTTCCAGTGATAGCCAAAATCTTCCTCTTAATCAGAAGTCCCGGGCTCCACAAAAGACCAGAATGAAGAAACAAGAAAACCATGCAAAGAAGGCATCTAAAAAAGACAACCAAGTAATTCTTTGGTTTGAAGTAGATGACACAGGCTGTGGTATTGATCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCAGATCCATCAACCACTAGATTGCATGGAGGCACCGGTCTTGGACTTTGCATTGTGAGAACCTTGGTCAATAAGATGGGTGGAGAAATCAAGGTTGTTAAAAAGGATGGCCCAGGAACCCTGATGCGATTGTACCTGCTTCTCAGTACACCCATGGATGCCACAGAACAACATTGTCACATAGATTATGAAGAGAATGGCTTAGTGGTATTGCTTGCACTGCATGGAGACACGGGTCGATCTATCACATCTAAATGGTTACAGAAAAATGGGGCTTGCACTCTAGAGGCATCTGAATGGAATGAACTGACGCAAATTCTGAGGGAACTCTTCCATGCAAGTTCAGTCCACCATAATGGCTTTGATGCACATTATGCAATAAGCAAGAGTTGGAAGTCCAAATTACTCAACATAGAAGAGATGAGGAACCCAACATTTGTGATTATAGTGGACATAGGGCTGCTTGATTTGAGCACAGATATATGGAAGGAACAGCTCAACTTCCTCCACAAATACTTTGGGAGATCAAAGTTCGCATGGGTGCTAAATCATGATACCTCTAATACCATAAAGATGGAGCTTCGAAGGAAGGGGCATATATTGATGGTCAACAAGCCCCTCTACAAGACCAAAATGTTTCATATTCTGGAAGCTGTCATAAAGGAGAGAAATCTTGAGCTGCAAAAGAAAAACACGACTGCTTCAAGAACCACGACGAAAGAGGGCGATGCGCATGAGTTTCTGGAGATTGATTCTACTCATTTTGATGGTGCTAGCTCTGATGGTTCTGACATATCTGAAACGGGTGCTTCTAATAGTGCCAATGGAGAAAAACGAAGGGGAAAAATTGTAAAATCCCATCTACCACCATCACAAGACAACAAAAACAACTGCCTAGTTGGATTAACAGATGAATCCGCAGAAGATAACATTTCAAGGAAAGAAGAATCATGTCAGAGTAGCCCCAACTGCCAGGACAGCCTTGAAGCGACGGAACATAAATTACAAGCAACCTTTCCAACAGAAGCTCAAGGAAAAGATTCTGGTTCTAGGAAAACATTTAGTGTCACTTGCTCAAGTAAAACTGTTAATGGAAAGAAATCTCTTGAAGGTCTGAGGATATTGCTTGCAGAAGACAATCCAGTACTTCAAAGAGTTGCAACCATAATGTTGGAGAAAATGGGAGCTACAGTAGTTGCAGTCGGAGATGGACAGCAGGCTGTGGATGCTCTGAATTGCATGCTCGGCACTGAAGATAGTAGAAAGGAGTCTCTAATGAAGGAGAGAAGTACAATATCTCAAACAGAAATTATCAGCTGCATACCTTATGACTTGATCCTGATGGATTGTCAGATGCCAAAGATGGATGGTTATGAAGCGACGAAAGCAATCAGGAAATCGGAAGCAGGAACAGGTTCTCACATTCCCGTAGTTGCTCTTACGGCCCACGCAATGTCATGTGATGAGGCTAAGTGCCTGGAGGTTGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGCTCATGGTGTCCACCATTATTTCACTCACTAAAACAACATCCTGA 3720 0.4223 MSPKQDIEEISSGNSVYSPASTSPMGSRFRLVFDRLWAFASSLKKSSTPRGRRIFHRDVEKEEFRYARTQCLSSYYSVFVVRLAIMAMLAILIGLLTILTWHFTKSYTAKSLDNLAYGLRYELLQRPILRMWNILNSTAEITKAQVELSEYVIRRYNNPANQAEQVELYEAMRSVTWALFSSSKALNSITINYRNGFVQAFHRDLKDNNTFYIYSDLANYSIGANEMKSLSTHQAWNDEAIRGNSSATWYREPLNPLSGVKIGKAKKIAPEDLINIAGIYQVPDEAASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVEFHSGYIYLTSLEGYLLATSTNAPLLTNSKPLKLKMAVDCEDDVIRLGAQWLKRTYGKNFPPSHGVHVEDVKLGHQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGKVDQRAFKTLVILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNHKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVTQIRKCSTALLRLLNNILDISKVESGKLVLENADFDLGRELEGLVDMFSVQCINHNVETVLNLSDDMPKVVQGDSARVVQIFANLINNSIKFTPSGHIILRGWCENPNCSSDSQNLPLNQKSRAPQKTRMKKQENHAKKASKKDNQVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKDGPGTLMRLYLLLSTPMDATEQHCHIDYEENGLVVLLALHGDTGRSITSKWLQKNGACTLEASEWNELTQILRELFHASSVHHNGFDAHYAISKSWKSKLLNIEEMRNPTFVIIVDIGLLDLSTDIWKEQLNFLHKYFGRSKFAWVLNHDTSNTIKMELRRKGHILMVNKPLYKTKMFHILEAVIKERNLELQKKNTTASRTTTKEGDAHEFLEIDSTHFDGASSDGSDISETGASNSANGEKRRGKIVKSHLPPSQDNKNNCLVGLTDESAEDNISRKEESCQSSPNCQDSLEATEHKLQATFPTEAQGKDSGSRKTFSVTCSSKTVNGKKSLEGLRILLAEDNPVLQRVATIMLEKMGATVVAVGDGQQAVDALNCMLGTEDSRKESLMKERSTISQTEIISCIPYDLILMDCQMPKMDGYEATKAIRKSEAGTGSHIPVVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMVSTIISLTKTTS 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0082 1239 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 616 765 IPR003594 -
Lele50g0082 1239 ProSiteProfiles Response regulatory domain profile. 1090 1235 IPR001789 GO:0000160
Lele50g0082 1239 MobiDBLite consensus disorder prediction 973 992 - -
Lele50g0082 1239 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 558 763 IPR036890 -
Lele50g0082 1239 CDD REC_hyHK_CKI1_RcsC-like 1091 1231 - -
Lele50g0082 1239 ProSiteProfiles Histidine kinase domain profile. 510 767 IPR005467 -
Lele50g0082 1239 Gene3D - 571 768 IPR036890 -
Lele50g0082 1239 MobiDBLite consensus disorder prediction 655 684 - -
Lele50g0082 1239 SMART REC_2 1089 1231 IPR001789 GO:0000160
Lele50g0082 1239 SMART HKATPase_4 616 767 IPR003594 -
Lele50g0082 1239 CDD HisKA 504 565 IPR003661 GO:0000155|GO:0007165
Lele50g0082 1239 MobiDBLite consensus disorder prediction 1 23 - -
Lele50g0082 1239 Pfam Response regulator receiver domain 1091 1230 IPR001789 GO:0000160
Lele50g0082 1239 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 490 570 IPR036097 GO:0000155|GO:0007165
Lele50g0082 1239 Gene3D - 1069 1236 - -
Lele50g0082 1239 PANTHER TWO-COMPONENT HISTIDINE KINASE 67 772 - -
Lele50g0082 1239 Gene3D - 491 570 - -
Lele50g0082 1239 SUPERFAMILY CheY-like 1087 1235 IPR011006 -
Lele50g0082 1239 PRINTS Bacterial sensor protein C-terminal signature 710 720 IPR004358 GO:0016310|GO:0016772
Lele50g0082 1239 PRINTS Bacterial sensor protein C-terminal signature 727 745 IPR004358 GO:0016310|GO:0016772
Lele50g0082 1239 PRINTS Bacterial sensor protein C-terminal signature 692 706 IPR004358 GO:0016310|GO:0016772
Lele50g0082 1239 FunFam Histidine kinase 1-like protein 491 570 - -
Lele50g0082 1239 MobiDBLite consensus disorder prediction 670 684 - -
Lele50g0082 1239 Pfam His Kinase A (phospho-acceptor) domain 504 569 IPR003661 GO:0000155|GO:0007165
Lele50g0082 1239 SMART HisKA_10 503 569 IPR003661 GO:0000155|GO:0007165
Lele50g0082 1239 MobiDBLite consensus disorder prediction 972 1014 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0082 Lele-ChrLele50 514715 527701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0082 23 1239 Histidine Kinase Gene Family AT2G17820 64.696 0.0 1562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele50g0082 HATPase_c 3e-22 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0546 54 11916723 11920617 Lele50g0082 50 514715 527701 CCT
Lele56g0888 56 7465705 7478449 Lele50g0082 50 514715 527701 CCT
Lele50g0082 50 514715 527701 Lele50g0082 50 514715 527701 ECH
Lele50g0082 50 514715 527701 Lele51g0079 51 459987 465975 hybridization
Lele50g0082 50 514715 527701 Lele52g0080 52 493518 500194 hybridization